Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq46 338 6e-88 >seq46 Length=215403 Score = 338 bits (374), Expect = 6e-88 Identities = 606/876 (69%), Gaps = 17/876 (2%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 |||| ||||| || |||||||| ||| |||||| ||||| || ||||| || ||| Sbjct 149121 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTA 149180 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469 || | | ||| || |||||||| ||||| |||||||| || ||||| | || || | Sbjct 149181 CCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATTAGT-GACATTGTAAACCTTCTT 149239 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 | ||| | | ||| ||||||||||||||||| ||| |||| |||||| ||||||| | Sbjct 149240 ATTACCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTT 149299 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 ||| |||||||||| | | ||||| | || ||| || ||||| ||||| |||| Sbjct 149300 ACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGC 149359 Query 13590 CACAGCCTCGTTTATAATAATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATG 13646 |||||||| | ||||||||| |||||| || || || || || | ||| Sbjct 149360 AACAGCCTC---AACAATAATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATG 149416 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 || | |||||| ||||||||| ||| | || |||||||||| || | |||||| Sbjct 149417 GGAGAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTT 149476 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 || |||||||| || ||||| || |||| || ||||||||||| || | |||||||| Sbjct 149477 GGAGAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGA 149536 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 || ||||| || || ||||| ||||| || || | || || ||| |||| | || Sbjct 149537 ACCACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGC 149596 Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 || | || || |||||| | |||||| |||| || ||| ||||| | || Sbjct 149597 TTCATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATG 149656 Query 13887 TTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAG-TACTTGAAATGTATGTATCAAT 13943 || || |||||||| |||| || |||| |||| | | |||| || || || || || Sbjct 149657 GTCAATAGCATTGAACAAATAGTCGGCTTC-CTTTGGATCCTTG--ATATAAGTGTCGAT 149713 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | | | ||| ||||||| || |||||||| || || || |||||||| || | Sbjct 149714 TAAAAGGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGA 149773 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||||||| ||| || || | | || |||| |||| ||||||||||| || Sbjct 149774 CTTGGCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGAT 149833 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14123 |||||| ||| ||||| || || | || | ||| ||| | | || || | || Sbjct 149834 ACCATCTGAAGCAGCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATT 149893 Query 14124 GAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | | ||| |||||||| |||||| ||| | ||| | ||| || | ||||| || Sbjct 149894 TAATTTATTTCTCCAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAA 149953 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTC 14216 | ||| |||| ||||| || | | ||| ||||| Sbjct 149954 AGAAGCTTCAGCCTTTTTGTAAAATTGCCAAATTTC 149989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587029221440