Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq46 123 4e-23
>seq46
Length=215403
Score = 123 bits (136), Expect = 4e-23
Identities = 561/875 (64%), Gaps = 37/875 (4%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || || || | ||||| |||||| || | |||||||||||| | || || || |
Sbjct 150009 TGTTCCCAATTAGATTCCATGAAATTTGGCAATTTTACAAAAAGGCTGAAGCTTCTTTCT 149950
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||| | |||||| ||||| | || || | |||||||| | | || | ||
Sbjct 149949 GGACTGCCGAAGAAATCGATTTAAGTAAAGATTTAAACGATTGGAGAAATAAATTAAATG 149890
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| || || || || || || | || |||||||| | || ||||| ||||
Sbjct 149889 ACGACGAACGTTTCTTCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCG 149830
Query 125176 TCAACGACAATCTG-TTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTG 125233
| || || ||| || |||| | ||||| || ||| | |||||||| | ||
Sbjct 149829 TTAATGAAAATTTGGTTGAAAAC-TTCTCAGCTGAAGTTCAA-ATTCCAGAAGCCAAGTC 149772
Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293
||| || || |||||||||||||| || ||| | || || |||| || || | ||
Sbjct 149771 CTTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAACTTATTCCCTTTTAAT 149712
Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGACACG 125351
|||| || || ||||| || | || | || | || || || || |||
Sbjct 149711 CGACACTTATATCAAGGATCC--AAAGGAAGCCGACTATTTGTTCAATGCTATTGACCAT 149654
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC-AAGTC 125410
| || | ||| | || |||||| | |||| || | |||||| ||||| ||| |
Sbjct 149653 ATTCCATGTATTAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCC 149594
Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470
|| | || || ||| | || |||||||| || || || || || ||||| |||
Sbjct 149593 TTATTT-GCTGAAAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTC 149535
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|| || ||||||||||| | |||||| | || | ||||| || | || | ||
Sbjct 149534 ATTCGCATCCATCTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAA 149475
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC--------ATTCTACTG 125582
||| || || | | |||| || || |||| ||| ||||| ||||| |
Sbjct 149474 CGAATTAATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCTCCCA 149415
Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642
||| | || || | || | |||||| | ||||||| | || |||
Sbjct 149414 TTTGGAAAATA-----GACCAGC-TGCAGAA--ATTATTGAAAAGATTAT------TGTT 149369
Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702
|| || || || ||| | || || | || || || |||| || || || |
Sbjct 149368 ---GAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCCTTACCTGTTAGTTTGTTA 149312
Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTA 125761
|| |||||||| ||| ||||||| | ||| | || ||||| || ||| | || | |||
Sbjct 149311 GGTATGAACTGTAAGTTAATGTGTCAATACGTTGAATTTGTTGCTGATAGATTATTAGTA 149252
Query 125762 CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821
| ||| | | ||| ||||||| | || ||||| |||||||||||| | |||
Sbjct 149251 GCATTTGGTAATAAG-AAGGTTTACAATGTCACTAATCCATTTGATTTCATGGAAAACAT 149193
Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856
||| ||| |||||||||||||| ||||| ||||
Sbjct 149192 TTCATTAGCTGGTAAGACCAACTTCTTCGAAAAGA 149158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741056458080960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |