Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46 123 4e-23 >seq46 Length=215403 Score = 123 bits (136), Expect = 4e-23 Identities = 561/875 (64%), Gaps = 37/875 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || || || | ||||| |||||| || | |||||||||||| | || || || | Sbjct 150009 TGTTCCCAATTAGATTCCATGAAATTTGGCAATTTTACAAAAAGGCTGAAGCTTCTTTCT 149950 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | |||||| ||||| | || || | |||||||| | | || | || Sbjct 149949 GGACTGCCGAAGAAATCGATTTAAGTAAAGATTTAAACGATTGGAGAAATAAATTAAATG 149890 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | || || || || || || | || |||||||| | || ||||| |||| Sbjct 149889 ACGACGAACGTTTCTTCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCG 149830 Query 125176 TCAACGACAATCTG-TTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTG 125233 | || || ||| || |||| | ||||| || ||| | |||||||| | || Sbjct 149829 TTAATGAAAATTTGGTTGAAAAC-TTCTCAGCTGAAGTTCAA-ATTCCAGAAGCCAAGTC 149772 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| || || |||||||||||||| || ||| | || || |||| || || | || Sbjct 149771 CTTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAACTTATTCCCTTTTAAT 149712 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGACACG 125351 |||| || || ||||| || | || | || | || || || || ||| Sbjct 149711 CGACACTTATATCAAGGATCC--AAAGGAAGCCGACTATTTGTTCAATGCTATTGACCAT 149654 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC-AAGTC 125410 | || | ||| | || |||||| | |||| || | |||||| ||||| ||| | Sbjct 149653 ATTCCATGTATTAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCC 149594 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 || | || || ||| | || |||||||| || || || || || ||||| ||| Sbjct 149593 TTATTT-GCTGAAAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTC 149535 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || || ||||||||||| | |||||| | || | ||||| || | || | || Sbjct 149534 ATTCGCATCCATCTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAA 149475 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC--------ATTCTACTG 125582 ||| || || | | |||| || || |||| ||| ||||| ||||| | Sbjct 149474 CGAATTAATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCTCCCA 149415 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 ||| | || || | || | |||||| | ||||||| | || ||| Sbjct 149414 TTTGGAAAATA-----GACCAGC-TGCAGAA--ATTATTGAAAAGATTAT------TGTT 149369 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 || || || || ||| | || || | || || || |||| || || || | Sbjct 149368 ---GAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCCTTACCTGTTAGTTTGTTA 149312 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTA 125761 || |||||||| ||| ||||||| | ||| | || ||||| || ||| | || | ||| Sbjct 149311 GGTATGAACTGTAAGTTAATGTGTCAATACGTTGAATTTGTTGCTGATAGATTATTAGTA 149252 Query 125762 CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | ||| | | ||| ||||||| | || ||||| |||||||||||| | ||| Sbjct 149251 GCATTTGGTAATAAG-AAGGTTTACAATGTCACTAATCCATTTGATTTCATGGAAAACAT 149193 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 ||| ||| |||||||||||||| ||||| |||| Sbjct 149192 TTCATTAGCTGGTAAGACCAACTTCTTCGAAAAGA 149158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056458080960