Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq46 232 6e-56
>seq46
Length=215403
Score = 232 bits (256), Expect = 6e-56
Identities = 565/844 (67%), Gaps = 19/844 (2%)
Strand=Plus/Plus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|||||||| || |||||| ||||| || ||||| || || || |||| ||||| |||
Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976
||||| ||||| || ||||| | ||| | ||| || ||| || ||| ||| |
Sbjct 149199 TCCATGAAATCAAATGGATTAGTG--ACATT-GTAAACCTTCTTATTACCAAATGCTACT 149255
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
|| ||||| ||||||||||| || | ||| || |||||| | ||||||||| ||||
Sbjct 149256 AATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAAC 149315
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
|| | ||||| | || || || || || | ||||| ||| |||| || || | ||
Sbjct 149316 AAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATA 149375
Query 13097 ATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155
|| | | | | || |||| | ||| |||| | ||| || | | ||| ||
Sbjct 149376 ATCT-TTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGC 149434
Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215
||||||| || || ||||||||||||| |||| ||||| || ||||||| ||| ||
Sbjct 149435 AAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGG 149494
Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC--CCGaaaaaaaTATT 13273
||| | |||| || || | |||||| || | || || |||| | ||| ||||||
Sbjct 149495 CATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATA-- 149552
Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-AT 13332
|||||||| || || || || | || |||||| || | | || | ||| | ||
Sbjct 149553 CCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCA-AATAAGGCTTCATCGTCTGTGAT 149611
Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392
||| | ||||||| || || | | ||| || |||| || || || || ||
Sbjct 149612 CCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAA 149671
Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452
||||| | |||||| || |||||||| || || || | | ||| ||||
Sbjct 149672 CAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAAGTTTC 149731
Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512
|||||||| ||||||||| |||||||||||||| || | | || |||| | ||
Sbjct 149732 AGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTG 149791
Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572
|||||| | | || |||| | || ||||| ||||| || || || |||||||||
Sbjct 149792 AACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAA 149851
Query 13573 aaaaGCAAGTAT----GTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628
|| ||||| || | | || ||| || |||| | | | ||| |||||
Sbjct 149852 GAACGCAAGGATTCTAGAAATGAAGAAA-CGTTCGTCGTCATTTAATTTATTTCTCCAAT 149910
Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688
| |||||||| |||||| | || || | ||||| |||||||| ||||||| |
Sbjct 149911 CGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTT 149970
Query 13689 TATA 13692
| ||
Sbjct 149971 TGTA 149974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430980845230992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |