Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq46 232 6e-56 >seq46 Length=215403 Score = 232 bits (256), Expect = 6e-56 Identities = 565/844 (67%), Gaps = 19/844 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| ||||| || ||||| || || || |||| ||||| ||| Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976 ||||| ||||| || ||||| | ||| | ||| || ||| || ||| ||| | Sbjct 149199 TCCATGAAATCAAATGGATTAGTG--ACATT-GTAAACCTTCTTATTACCAAATGCTACT 149255 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||| ||||||||||| || | ||| || |||||| | ||||||||| |||| Sbjct 149256 AATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAAC 149315 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || | ||||| | || || || || || | ||||| ||| |||| || || | || Sbjct 149316 AAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATA 149375 Query 13097 ATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 || | | | | || |||| | ||| |||| | ||| || | | ||| || Sbjct 149376 ATCT-TTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGC 149434 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||||||| || || ||||||||||||| |||| ||||| || ||||||| ||| || Sbjct 149435 AAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGG 149494 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC--CCGaaaaaaaTATT 13273 ||| | |||| || || | |||||| || | || || |||| | ||| |||||| Sbjct 149495 CATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATA-- 149552 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-AT 13332 |||||||| || || || || | || |||||| || | | || | ||| | || Sbjct 149553 CCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCA-AATAAGGCTTCATCGTCTGTGAT 149611 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 ||| | ||||||| || || | | ||| || |||| || || || || || Sbjct 149612 CCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAA 149671 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 ||||| | |||||| || |||||||| || || || | | ||| |||| Sbjct 149672 CAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAAGTTTC 149731 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 |||||||| ||||||||| |||||||||||||| || | | || |||| | || Sbjct 149732 AGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTG 149791 Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 |||||| | | || |||| | || ||||| ||||| || || || ||||||||| Sbjct 149792 AACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAA 149851 Query 13573 aaaaGCAAGTAT----GTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 || ||||| || | | || ||| || |||| | | | ||| ||||| Sbjct 149852 GAACGCAAGGATTCTAGAAATGAAGAAA-CGTTCGTCGTCATTTAATTTATTTCTCCAAT 149910 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 | |||||||| |||||| | || || | ||||| |||||||| ||||||| | Sbjct 149911 CGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTT 149970 Query 13689 TATA 13692 | || Sbjct 149971 TGTA 149974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980845230992