Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq46 241 3e-58 seq254 176 1e-38 seq253 165 2e-35 >seq46 Length=215403 Score = 241 bits (266), Expect = 3e-58 Identities = 580/871 (67%), Gaps = 39/871 (4%) Strand=Plus/Minus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 |||||| |||| | |||||||| ||||||| |||||| | ||| | | | || ||| Sbjct 149974 TACAAAAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAAATCGATTTAAGTAAAGATTTA 149915 Query 268805 ATAGATTGGAAAAAT---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCG 268861 | ||||||| |||| ||||| || ||| | || || ||| || |||||| Sbjct 149914 AACGATTGGAGAAATAAATTAAATGACGACGAACGTTTCTTCATTTCTAGAATCCTTGCG 149855 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 || ||||| | | |||||||||||||| |||||| | || || || |||| || Sbjct 149854 TTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTGGTTGAAAACTTCTCAGCTGAA 149795 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 || || ||||| ||||||| | || || || ||||| || || ||||| |||||| Sbjct 149794 GTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCCAAATCATGATGGAAAACATTCAT 149735 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040 || || | || || ||||| || |||||||| | ||| | ||| ||| | Sbjct 149734 TCTGAAACTTATTCCCTTTTAATCGACACTTATATCAAGGAT-----CCAAAGGAAGCCG 149680 Query 269041 ACTATTTTCTTCTATGAGAACTATGGAC---------TGTGTGAGaaaaaaaTCTGAATG 269091 ||||||| ||| ||| |||| ||| ||| | ||||| || |||| || Sbjct 149679 ACTATTTG-TTCAATG----CTATTGACCATATTCCATGTATTAGAAAGAAGGCTGACTG 149625 Query 269092 GGCTCTGAAATGGATAA---ACGATAGCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTTT 269146 |||||| | |||||| | ||||| || |||| | ||||| |||||||| || Sbjct 149624 GGCTCTTAGATGGATCACAGACGATGAAGC--CTTATTTGCTGAAAGATTAGTTGCATTC 149567 Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 || ||||| |||||||| ||||| || || || || | ||||||||||| ||||| Sbjct 149566 GCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCTTTTGGTTAAAGAAG 149507 Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266 ||||| | ||||| || ||||| ||||| |||||||| || | || || ||||||||| Sbjct 149506 AGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTAGAGATGAAGGTTTA 149447 Query 269267 CACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGAT 269326 || || || |||||||||||||| | ||| | | | | ||| || ||| Sbjct 149446 CATACTGATTTTGCTTGTTTATTATTCTCCCATT---TGGAAAATAGACCAGCTGCAGAA 149390 Query 269327 AGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCT 269386 | | | | ||||| | | |||||| || | |||| ||||| | || || || Sbjct 149389 ATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCC 149330 Query 269387 CTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTA 269446 || || | | | | |||||||| | || | ||| |||| || | || || Sbjct 149329 TTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTCAATACGTTGAATTTGTT 149270 Query 269447 TCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCG 269503 |||||||||| | || | || || || ||| || || || || ||||| Sbjct 149269 GCTGATAGATTATTAGTAGCATTTGG---TAATAAGAAGGTTTACAATGTCACTAATCCA 149213 Query 269504 TTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTA 269563 ||| ||| ||||| || || ||||||| |||||| | || |||||||| ||| | || Sbjct 149212 TTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTCTTCGAAAAGAGAGTT 149153 Query 269564 AGTAACTATCAGAAAATGGGTGTAATGTCTA 269594 | | ||||| || ||||| ||| ||| Sbjct 149152 TCTGATTATCAAAAGGCTGGTGTTATGGCTA 149122 >seq254 Length=76587 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||||| |||||||| || || || || ||||||||| Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || |||||||| |||| || ||||||||||| || Sbjct 42974 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 43033 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || ||||| | ||| ||||| || | ||| ||| || ||| || Sbjct 43034 ATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACT 43093 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||| ||||||||||| | || || || || || |||||||| Sbjct 43094 TCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 >seq253 Length=293773 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | |||||| |||||||| || || || || |||||| Sbjct 106529 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106588 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||| ||||||| |||||| ||||| || |||| | ||||||||||| Sbjct 106589 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106648 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| || | ||| || || || | ||| || || ||| Sbjct 106649 GGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCA 106708 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || |||| |||||||||||||| || | ||||| || || || |||||| Sbjct 106709 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATT 106759 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | |||||| |||||||| || || || || |||||| Sbjct 106301 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106360 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||| ||||||| |||||| ||||| || |||| | ||||||||||| Sbjct 106361 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106420 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| || | ||| || || || | || || || ||| Sbjct 106421 GGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCA 106480 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||| ||||||||||| | || || || || || ||||| Sbjct 106481 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || ||||||||||| || || || || ||||||||| Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| |||||| ||||| || |||| | ||||| ||||| || Sbjct 106136 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGA 106195 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| ||||| || | ||| || || || | || || || ||| || Sbjct 106196 ATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACT 106255 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| ||||||||||| | || || || || || ||||| Sbjct 106256 TCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394033321568