Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq46 241 3e-58
seq254 176 1e-38
seq253 165 2e-35
>seq46
Length=215403
Score = 241 bits (266), Expect = 3e-58
Identities = 580/871 (67%), Gaps = 39/871 (4%)
Strand=Plus/Minus
Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804
|||||| |||| | |||||||| ||||||| |||||| | ||| | | | || |||
Sbjct 149974 TACAAAAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAAATCGATTTAAGTAAAGATTTA 149915
Query 268805 ATAGATTGGAAAAAT---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCG 268861
| ||||||| |||| ||||| || ||| | || || ||| || ||||||
Sbjct 149914 AACGATTGGAGAAATAAATTAAATGACGACGAACGTTTCTTCATTTCTAGAATCCTTGCG 149855
Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921
|| ||||| | | |||||||||||||| |||||| | || || || |||| ||
Sbjct 149854 TTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTGGTTGAAAACTTCTCAGCTGAA 149795
Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981
|| || ||||| ||||||| | || || || ||||| || || ||||| ||||||
Sbjct 149794 GTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCCAAATCATGATGGAAAACATTCAT 149735
Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040
|| || | || || ||||| || |||||||| | ||| | ||| ||| |
Sbjct 149734 TCTGAAACTTATTCCCTTTTAATCGACACTTATATCAAGGAT-----CCAAAGGAAGCCG 149680
Query 269041 ACTATTTTCTTCTATGAGAACTATGGAC---------TGTGTGAGaaaaaaaTCTGAATG 269091
||||||| ||| ||| |||| ||| ||| | ||||| || |||| ||
Sbjct 149679 ACTATTTG-TTCAATG----CTATTGACCATATTCCATGTATTAGAAAGAAGGCTGACTG 149625
Query 269092 GGCTCTGAAATGGATAA---ACGATAGCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTTT 269146
|||||| | |||||| | ||||| || |||| | ||||| |||||||| ||
Sbjct 149624 GGCTCTTAGATGGATCACAGACGATGAAGC--CTTATTTGCTGAAAGATTAGTTGCATTC 149567
Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206
|| ||||| |||||||| ||||| || || || || | ||||||||||| |||||
Sbjct 149566 GCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCTTTTGGTTAAAGAAG 149507
Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266
||||| | ||||| || ||||| ||||| |||||||| || | || || |||||||||
Sbjct 149506 AGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTAGAGATGAAGGTTTA 149447
Query 269267 CACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGAT 269326
|| || || |||||||||||||| | ||| | | | | ||| || |||
Sbjct 149446 CATACTGATTTTGCTTGTTTATTATTCTCCCATT---TGGAAAATAGACCAGCTGCAGAA 149390
Query 269327 AGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCT 269386
| | | | ||||| | | |||||| || | |||| ||||| | || || ||
Sbjct 149389 ATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCC 149330
Query 269387 CTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTA 269446
|| || | | | | |||||||| | || | ||| |||| || | || ||
Sbjct 149329 TTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTCAATACGTTGAATTTGTT 149270
Query 269447 TCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCG 269503
|||||||||| | || | || || || ||| || || || || |||||
Sbjct 149269 GCTGATAGATTATTAGTAGCATTTGG---TAATAAGAAGGTTTACAATGTCACTAATCCA 149213
Query 269504 TTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTA 269563
||| ||| ||||| || || ||||||| |||||| | || |||||||| ||| | ||
Sbjct 149212 TTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTCTTCGAAAAGAGAGTT 149153
Query 269564 AGTAACTATCAGAAAATGGGTGTAATGTCTA 269594
| | ||||| || ||||| ||| |||
Sbjct 149152 TCTGATTATCAAAAGGCTGGTGTTATGGCTA 149122
>seq254
Length=76587
Score = 176 bits (194), Expect = 1e-38
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | || | ||||| |||||||| || || || || |||||||||
Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||| ||||||| ||| || |||||||| |||| || ||||||||||| ||
Sbjct 42974 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 43033
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| ||||| || ||||| | ||| ||||| || | ||| ||| || ||| ||
Sbjct 43034 ATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACT 43093
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|||| ||||| ||||||||||| | || || || || || ||||||||
Sbjct 43094 TCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143
>seq253
Length=293773
Score = 165 bits (182), Expect = 2e-35
Identities = 175/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | || | |||||| |||||||| || || || || ||||||
Sbjct 106529 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106588
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||||||| ||||||| |||||| ||||| || |||| | |||||||||||
Sbjct 106589 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106648
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| ||||| || | ||| || || || | ||| || || |||
Sbjct 106649 GGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCA 106708
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| |||| |||||||||||||| || | ||||| || || || ||||||
Sbjct 106709 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATT 106759
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | || | |||||| |||||||| || || || || ||||||
Sbjct 106301 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106360
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||||||| ||||||| |||||| ||||| || |||| | |||||||||||
Sbjct 106361 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106420
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| ||||| || | ||| || || || | || || || |||
Sbjct 106421 GGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCA 106480
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||||| ||||||||||| | || || || || || |||||
Sbjct 106481 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | |||| || ||||||||||| || || || || |||||||||
Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||| ||||||| |||||| ||||| || |||| | ||||| ||||| ||
Sbjct 106136 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGA 106195
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| ||||| ||||| || | ||| || || || | || || || ||| ||
Sbjct 106196 ATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACT 106255
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| ||||||||||| | || || || || || |||||
Sbjct 106256 TCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151394033321568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |