Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq276 197 2e-45 seq74 136 5e-27 seq217 93.3 5e-14 >seq276 Length=61907 Score = 197 bits (218), Expect = 2e-45 Identities = 222/293 (76%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 7004 TAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATG 7063 || ||||||||||||| || ||||||||||| || | | | | | | ||||| || Sbjct 8621 TAACATAAAATTGACAAAAGACATGACATGGTGGGAGTGCCATTTTAGCAAAATCAGGTG 8680 Query 7064 GATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAA 7123 | |||||||||| ||| | ||| | |||||||| |||||| || |||||||| |||||| Sbjct 8681 GGTTCCAAGCAGACATGATAATTCTTCTATCATATGGATTCGTCTTTAATTTCTTTATAA 8740 Query 7124 TTATTTGTAATTGATC-TATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTA 7182 |||||||||||| ||| || ||||| ||||| || || ||||| | ||| | | Sbjct 8741 CATCTTGTAATTGATCATAT-CCTTGACCGGTATAATCAGCATCACAATCCACATATTCA 8799 Query 7183 GCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGA 7242 || ||||||||||||||||| || ||||||| ||||||||||||||||| ||||||| Sbjct 8800 GCACCAAAATGTCTCCATTGGAAACCATAAACCGGACCTAAATCACCTTCACGACGATGA 8859 Query 7243 TTAAATCCTAATCGATTTAAATTAGATT---TTGATCCATAAGCATCCCAAAT 7292 | ||||||||| || |||| ||| |||||| | | | |||||||| Sbjct 8860 GTCAATCCTAATTTATCCAAAT---ATTCACGTGATCCGTTACCTTCCCAAAT 8909 Score = 145 bits (160), Expect = 9e-30 Identities = 225/313 (72%), Gaps = 14/313 (4%) Strand=Plus/Plus Query 6693 GATAGCTGGATGAGGATTATAATCTAACAATT-CAAAATCTTCAAATTTAAAATCA-CA- 6749 ||| || ||| | || | ||| || ||||||| ||||||||||||| ||||||||| || Sbjct 8241 GATTGCAGGAAGTGGTTCATA-TCCAACAATTTCAAAATCTTCAAACTTAAAATCATCAA 8299 Query 6750 ------TAAATT-ATCAGA-Ctttttt-tttAAT-ATTACAACAGGTGAAGGTTTTATTG 6799 ||| || ||| |||| || |||||| |||| ||| | ||||| | Sbjct 8300 TTGATTTAATTTCATCTCTTCTTTCTTCTTTAATCATTAATTTAGGGAATTGTTTTGGAG 8359 Query 6800 ATCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTA 6859 || | |||||||| || | || | |||||||||||||| | |||||| || || | Sbjct 8360 CTCTTGAAAATTGTTCCTTCAATGCATCAATATGATCTAAATACACATGAGCGTCACCCA 8419 Query 6860 GCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATA 6919 ||||||||||||||||| | |||||| || | || ||||| | | ||||||| Sbjct 8420 TAGTATGAATAAATTCACCACAATCCATATCGACTACATGGGCAATCATCTTGGTTAATA 8479 Query 6920 ATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAAC 6979 ||||||| ||||| | |||||| || || || | ||||||||| |||||||||||| Sbjct 8480 ATGCATATGAAGCGATATTAAATGGAACGCCAAGTCCCATATCACATGATCTTTGATACA 8539 Query 6980 ATTGACAAGATAA 6992 | ||||||||| Sbjct 8540 ACAAACAAGATAA 8552 >seq74 Length=12437 Score = 136 bits (150), Expect = 5e-27 Identities = 309/457 (68%), Gaps = 27/457 (6%) Strand=Plus/Minus Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 |||| |||| | |||||| ||||| | ||||| ||||||||| ||| |||| Sbjct 10846 AAAAGTTAGATTACAAACATTGTAAAGGGTTATTATTGTTTGGACCTCCAGGTACTGGTA 10787 Query 164555 AAACATTAATGGCTCGATGCATTG-CTCAA--GCTTTTAAATCGC---GACCCGTTAAAA 164608 | || ||||| || || | ||| || || |||| ||| | || ||| || | Sbjct 10786 AGACTTTAATTGCCCG-TAAATTATCTAAAATGCTT---AATGGAAAAGAACCG--AAGA 10733 Query 164609 TTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAA 164668 ||||||||||||||||| | || | || ||||| |||| ||||||| ||| || | | Sbjct 10732 TTGTTAATGGTCCTGAAATGTTAAGTAAGTATGTTGGTGCATCAGAAGAAAATATTCGTA 10673 Query 164669 AGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATG 164728 | || || |||| || |||| |||| | || || ||| || | | || |||| Sbjct 10672 ATTTATTCAAGGATGCAGAAGCAGAATATAAACAAAAAGGAGAAGACTCTGATTTGCATG 10613 Query 164729 TTATTGTTTTTGATGAGATAGATGC--TCTTT--GCAAAAAACGTGGTGATAAT---AT- 164780 ||||| | |||||||| | ||| | | ||| ||||| | || || ||| || Sbjct 10612 TTATTATCTTTGATGAATTGGATTCGGTGTTTAAGCAAAGAGGGTCTGGAAAATCCGATG 10553 Query 164781 -------TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAAT 164833 | || |||| || |||||||| || | || || || |||||||| || Sbjct 10552 GTACTGGTGTTGGTGATAATGTTGTTAATCAATTATTATCAAAGATGGATGGTGTTGACC 10493 Query 164834 CCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTT 164893 || ||||||||||| || | |||||||| || || |||||||||||| ||||| Sbjct 10492 AGTTGAATAATATTTTGGTTATTGGTATGACTAATCGTTTGGATTTAATTGATACTGCTT 10433 Query 164894 TATTACGACCTGGTCGATTAGAATTGAAAATAGAAAT 164930 ||||| |||| ||| |||| ||| | |||| ||||| Sbjct 10432 TATTAAGACCAGGTAGATTTGAAATTCAAATTGAAAT 10396 >seq217 Length=263222 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 ||||| ||| | | ||| || |||| || || |||| |||||||||||||| ||| Sbjct 89645 GTTAAGGTTAGAATGAGAACTACTAAGATTCCGCAAATTGGTGATAAGTTTGCGTCTAGA 89704 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || || | | |||| | || ||||||||||| || || | Sbjct 89705 CATGGTCAAAAGGGTACTATCGGGGTTACTTATAGACATGAAGATATGCCGTTCACAGCA 89764 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||||| || || ||| | || ||||| ||||||||| ||||| ||| ||||| Sbjct 89765 CAAGGTATTGTTCCTGATTTGATCATTAATCCACATGCTATTCCATCTCGTATGAC 89820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869795273600