Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq276 197 2e-45
seq74 136 5e-27
seq217 93.3 5e-14
>seq276
Length=61907
Score = 197 bits (218), Expect = 2e-45
Identities = 222/293 (76%), Gaps = 8/293 (3%)
Strand=Plus/Plus
Query 7004 TAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATG 7063
|| ||||||||||||| || ||||||||||| || | | | | | | ||||| ||
Sbjct 8621 TAACATAAAATTGACAAAAGACATGACATGGTGGGAGTGCCATTTTAGCAAAATCAGGTG 8680
Query 7064 GATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAA 7123
| |||||||||| ||| | ||| | |||||||| |||||| || |||||||| ||||||
Sbjct 8681 GGTTCCAAGCAGACATGATAATTCTTCTATCATATGGATTCGTCTTTAATTTCTTTATAA 8740
Query 7124 TTATTTGTAATTGATC-TATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTA 7182
|||||||||||| ||| || ||||| ||||| || || ||||| | ||| | |
Sbjct 8741 CATCTTGTAATTGATCATAT-CCTTGACCGGTATAATCAGCATCACAATCCACATATTCA 8799
Query 7183 GCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGA 7242
|| ||||||||||||||||| || ||||||| ||||||||||||||||| |||||||
Sbjct 8800 GCACCAAAATGTCTCCATTGGAAACCATAAACCGGACCTAAATCACCTTCACGACGATGA 8859
Query 7243 TTAAATCCTAATCGATTTAAATTAGATT---TTGATCCATAAGCATCCCAAAT 7292
| ||||||||| || |||| ||| |||||| | | | ||||||||
Sbjct 8860 GTCAATCCTAATTTATCCAAAT---ATTCACGTGATCCGTTACCTTCCCAAAT 8909
Score = 145 bits (160), Expect = 9e-30
Identities = 225/313 (72%), Gaps = 14/313 (4%)
Strand=Plus/Plus
Query 6693 GATAGCTGGATGAGGATTATAATCTAACAATT-CAAAATCTTCAAATTTAAAATCA-CA- 6749
||| || ||| | || | ||| || ||||||| ||||||||||||| ||||||||| ||
Sbjct 8241 GATTGCAGGAAGTGGTTCATA-TCCAACAATTTCAAAATCTTCAAACTTAAAATCATCAA 8299
Query 6750 ------TAAATT-ATCAGA-Ctttttt-tttAAT-ATTACAACAGGTGAAGGTTTTATTG 6799
||| || ||| |||| || |||||| |||| ||| | ||||| |
Sbjct 8300 TTGATTTAATTTCATCTCTTCTTTCTTCTTTAATCATTAATTTAGGGAATTGTTTTGGAG 8359
Query 6800 ATCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTA 6859
|| | |||||||| || | || | |||||||||||||| | |||||| || || |
Sbjct 8360 CTCTTGAAAATTGTTCCTTCAATGCATCAATATGATCTAAATACACATGAGCGTCACCCA 8419
Query 6860 GCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATA 6919
||||||||||||||||| | |||||| || | || ||||| | | |||||||
Sbjct 8420 TAGTATGAATAAATTCACCACAATCCATATCGACTACATGGGCAATCATCTTGGTTAATA 8479
Query 6920 ATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAAC 6979
||||||| ||||| | |||||| || || || | ||||||||| ||||||||||||
Sbjct 8480 ATGCATATGAAGCGATATTAAATGGAACGCCAAGTCCCATATCACATGATCTTTGATACA 8539
Query 6980 ATTGACAAGATAA 6992
| |||||||||
Sbjct 8540 ACAAACAAGATAA 8552
>seq74
Length=12437
Score = 136 bits (150), Expect = 5e-27
Identities = 309/457 (68%), Gaps = 27/457 (6%)
Strand=Plus/Minus
Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554
|||| |||| | |||||| ||||| | ||||| ||||||||| ||| ||||
Sbjct 10846 AAAAGTTAGATTACAAACATTGTAAAGGGTTATTATTGTTTGGACCTCCAGGTACTGGTA 10787
Query 164555 AAACATTAATGGCTCGATGCATTG-CTCAA--GCTTTTAAATCGC---GACCCGTTAAAA 164608
| || ||||| || || | ||| || || |||| ||| | || ||| || |
Sbjct 10786 AGACTTTAATTGCCCG-TAAATTATCTAAAATGCTT---AATGGAAAAGAACCG--AAGA 10733
Query 164609 TTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAA 164668
||||||||||||||||| | || | || ||||| |||| ||||||| ||| || | |
Sbjct 10732 TTGTTAATGGTCCTGAAATGTTAAGTAAGTATGTTGGTGCATCAGAAGAAAATATTCGTA 10673
Query 164669 AGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATG 164728
| || || |||| || |||| |||| | || || ||| || | | || ||||
Sbjct 10672 ATTTATTCAAGGATGCAGAAGCAGAATATAAACAAAAAGGAGAAGACTCTGATTTGCATG 10613
Query 164729 TTATTGTTTTTGATGAGATAGATGC--TCTTT--GCAAAAAACGTGGTGATAAT---AT- 164780
||||| | |||||||| | ||| | | ||| ||||| | || || ||| ||
Sbjct 10612 TTATTATCTTTGATGAATTGGATTCGGTGTTTAAGCAAAGAGGGTCTGGAAAATCCGATG 10553
Query 164781 -------TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAAT 164833
| || |||| || |||||||| || | || || || |||||||| ||
Sbjct 10552 GTACTGGTGTTGGTGATAATGTTGTTAATCAATTATTATCAAAGATGGATGGTGTTGACC 10493
Query 164834 CCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTT 164893
|| ||||||||||| || | |||||||| || || |||||||||||| |||||
Sbjct 10492 AGTTGAATAATATTTTGGTTATTGGTATGACTAATCGTTTGGATTTAATTGATACTGCTT 10433
Query 164894 TATTACGACCTGGTCGATTAGAATTGAAAATAGAAAT 164930
||||| |||| ||| |||| ||| | |||| |||||
Sbjct 10432 TATTAAGACCAGGTAGATTTGAAATTCAAATTGAAAT 10396
>seq217
Length=263222
Score = 93.3 bits (102), Expect = 5e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387
||||| ||| | | ||| || |||| || || |||| |||||||||||||| |||
Sbjct 89645 GTTAAGGTTAGAATGAGAACTACTAAGATTCCGCAAATTGGTGATAAGTTTGCGTCTAGA 89704
Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447
|| |||||| || || || | | |||| | || ||||||||||| || || |
Sbjct 89705 CATGGTCAAAAGGGTACTATCGGGGTTACTTATAGACATGAAGATATGCCGTTCACAGCA 89764
Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503
| ||||| || || ||| | || ||||| ||||||||| ||||| ||| |||||
Sbjct 89765 CAAGGTATTGTTCCTGATTTGATCATTAATCCACATGCTATTCCATCTCGTATGAC 89820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595869795273600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |