Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq79 98.7 2e-16 seq259 91.5 2e-14 >seq79 Length=192299 Score = 98.7 bits (108), Expect = 2e-16 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||||||||| | | | ||| | | ||||| | Sbjct 191120 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTAGAAGATTAGCTAGAAGAGGTGGGG 191061 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | |||| || |||||||||| | | | ||| || || ||| | Sbjct 191060 TTAAGCGTATTTCTGCTTTAATCTATGAAGAAGTCAGAGTTGTCTTAAAACAATTCTTAG 191001 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | |||| ||| |||||| | |||||||| ||||| || | |||||||| || | Sbjct 191000 AATCCGTCATCAGAGATGCTGTTACTTATACCGAACACGCCAAGAGAAAGACTGTTACTT 190941 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 || ||||| | || || || || || | ||||| | | | |||||||| || ||| Sbjct 190940 CCTTGGATGTTGTTTACGCCTTAAAGAGACAAGGTAGAACCTTGTATGGTTTCGGTGGTT 190881 Query 16698 AA 16699 || Sbjct 190880 AA 190879 >seq259 Length=73057 Score = 91.5 bits (100), Expect = 2e-14 Identities = 172/252 (68%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | |||||||||| ||||| || || ||||||||||| | | | || | Sbjct 46772 AGATCT-TGAGAGATAACATTCAAGGTATTACAAAGCCAGCTATTAGAAGATTAGCCAGA 46830 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || |||||| | |||| || |||||||||| | | | ||| || || Sbjct 46831 AGAGGTGGTGTTAAGCGTATTTCTGCTTTAATCTATGAAGAAGTCAGAGTTGTCTTAAAA 46890 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 ||| | | |||| ||| |||||| | |||||||| ||||| || | ||| Sbjct 46891 CAATTCTTAGAATCCGTCATCAGAGATGCTGTTACTTATACCGAACACGCCAAGAGAAAG 46950 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 ||||| || || | ||| | || ||||| || || | ||||| | | | |||||| Sbjct 46951 ACTGTTACTTCTTTAGATGTTGTTTATGCTTTAAAGAGACAAGGTAGAACCTTATATGGT 47010 Query 16688 TTTGGAAGTTAA 16699 ||||| ||||| Sbjct 47011 TTTGGTGGTTAA 47022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074929365128