Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq46 291 9e-74
>seq46
Length=215403
Score = 291 bits (322), Expect = 9e-74
Identities = 593/881 (67%), Gaps = 9/881 (1%)
Strand=Plus/Plus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||||||| |||||| |||||||| || || ||||| || | ||||| || |
Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198
Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAATATT-TTATTACAACCCAGTTCTGAT 21301
||||| |||||||||||||| | | ||| |||| || ||||||| | | | || |
Sbjct 149199 TCCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCTTATTACCA---AATGCTACT 149255
Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
||||||||||| || |||||||| | |||||||||||||| | ||| |||||||| | |
Sbjct 149256 AATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAAC 149315
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
|| | ||||| | || | || || || ||||| |||| || || ||||||||
Sbjct 149316 AAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATA 149375
Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481
|| ||| || | || | || || || || || | ||||| |||
Sbjct 149376 ATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGCA 149435
Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541
|||||| ||| ||||||||||| |||| |||||||| || || ||||||||||| |||
Sbjct 149436 AAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGGC 149495
Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601
||||| |||||||| ||||||||||| || || || |||| || |||||||| ||
Sbjct 149496 ATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATACCT 149555
Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661
||||| ||||| ||||||||||||| |||| | || | ||| | || ||||||
Sbjct 149556 TCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTCATCGTCTGTGATCCAT 149615
Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721
| ||||| | ||||| | | ||||||| ||| |||||||| || || | |
Sbjct 149616 CTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAACAAA 149675
Query 21722 TGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781
| | ||| | | ||| | || ||| ||||||||
Sbjct 149676 TAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAAGTTTCAGAA 149735
Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841
|| || ||||| ||| || || || || || || | | || |||| | ||||||
Sbjct 149736 TGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTGAACT 149795
Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901
|| | | || || | |||| |||||||| || || ||||| || ||||| ||
Sbjct 149796 TCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAAGAAC 149855
Query 21902 GCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT---TTTTTCCAATCTAAT 21958
|| | || | || || | ||||||| || ||||| ||| ||||||| |
Sbjct 149856 GCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTCCAATCGTTT 149915
Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018
|||||||| |||||| | |||||| | ||||| || ||| ||||||||| ||
Sbjct 149916 AAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTTTGTAA 149975
Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
| ||| || |||| || | ||||| || || |||||
Sbjct 149976 AATTGCCAAATTTCATGGAATCTAATTGGGAACATGACAAA 150016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531898831967040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |