Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq46 291 9e-74 >seq46 Length=215403 Score = 291 bits (322), Expect = 9e-74 Identities = 593/881 (67%), Gaps = 9/881 (1%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||||||| |||||| |||||||| || || ||||| || | ||||| || | Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198 Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAATATT-TTATTACAACCCAGTTCTGAT 21301 ||||| |||||||||||||| | | ||| |||| || ||||||| | | | || | Sbjct 149199 TCCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCTTATTACCA---AATGCTACT 149255 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 ||||||||||| || |||||||| | |||||||||||||| | ||| |||||||| | | Sbjct 149256 AATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAAC 149315 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 || | ||||| | || | || || || ||||| |||| || || |||||||| Sbjct 149316 AAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATA 149375 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 || ||| || | || | || || || || || | ||||| ||| Sbjct 149376 ATCTTTTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGCA 149435 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 |||||| ||| ||||||||||| |||| |||||||| || || ||||||||||| ||| Sbjct 149436 AAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGGC 149495 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 ||||| |||||||| ||||||||||| || || || |||| || |||||||| || Sbjct 149496 ATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATACCT 149555 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 ||||| ||||| ||||||||||||| |||| | || | ||| | || |||||| Sbjct 149556 TCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTCATCGTCTGTGATCCAT 149615 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 | ||||| | ||||| | | ||||||| ||| |||||||| || || | | Sbjct 149616 CTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAACAAA 149675 Query 21722 TGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781 | | ||| | | ||| | || ||| |||||||| Sbjct 149676 TAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAAGTTTCAGAA 149735 Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841 || || ||||| ||| || || || || || || | | || |||| | |||||| Sbjct 149736 TGAATGTTTTCCATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTGAACT 149795 Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901 || | | || || | |||| |||||||| || || ||||| || ||||| || Sbjct 149796 TCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAAGAAC 149855 Query 21902 GCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT---TTTTTCCAATCTAAT 21958 || | || | || || | ||||||| || ||||| ||| ||||||| | Sbjct 149856 GCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTCATTTAATTTATTTCTCCAATCGTTT 149915 Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018 |||||||| |||||| | |||||| | ||||| || ||| ||||||||| || Sbjct 149916 AAATCTTTACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTTTGTAA 149975 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 | ||| || |||| || | ||||| || || ||||| Sbjct 149976 AATTGCCAAATTTCATGGAATCTAATTGGGAACATGACAAA 150016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531898831967040