Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq46 187 6e-42 seq35 86.0 2e-11 >seq46 Length=215403 Score = 187 bits (206), Expect = 6e-42 Identities = 533/809 (66%), Gaps = 28/809 (3%) Strand=Plus/Minus Query 22213 ATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTT 22272 || || || ||||||||| | |||| ||||| ||| ||| ||| | || || || Sbjct 149863 ATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTGGTTGAAAACTTC 149804 Query 22273 GCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAA 22332 || ||||| ||||| ||||| |||| | ||||||||| | ||||| ||||| ||| Sbjct 149803 TCAGCTGAAGTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCCAAATCATGATGGAA 149744 Query 22333 AATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGAA--GATAAAGACG 22390 || |||| | ||||| ||||| | | | | |||| || | ||| | | | Sbjct 149743 AACATTCATTCTGAAACTTATTCCCTTTTAATCGA--CACTTATATCAAGGATCCAAAGG 149686 Query 22391 AACAACGAA-ACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGAT 22449 || ||| | || ||| || ||| | |||| || |||| || ||||| || Sbjct 149685 AAGC-CGACTATTTGTTCAATGCTATTGACCATATTCCATGTATTAGAAAGAAGGCTGAC 149627 Query 22450 TGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTT 22506 ||||| || | |||||| | || ||||| | ||| || ||| | | ||||||| Sbjct 149626 TGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCTGAAAGATTAGTTGCATTC 149567 Query 22507 GCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaa 22566 |||| |||||||| |||||||| ||| |||| | ||||||||| |||| || Sbjct 149566 GCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCTTTTGGTTAAAGAAG 149507 Query 22567 CGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTT 22626 | | | ||||| ||| |||| || || || || ||||| | ||||||| ||| | Sbjct 149506 AGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTAGAGATGAAGGTTTA 149447 Query 22627 CATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTT--CCATATG 22684 ||||| |||||||| ||| | ||| || | |||| ||| | ||| || Sbjct 149446 CATACTGATTTTGCTTGTTTATTAT-------TC-TCCCATTTGGAAAATAGACCAGCTG 149395 Query 22685 AAACTGTACTTGATA---TTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCG 22741 | | |||| | ||||| | || |||| ||||| ||| | | Sbjct 149394 CAGAAATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAGGAATTCTTCACTG 149335 Query 22742 AGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAAT 22801 | || ||||| || ||| | | ||||| || | | |||| || ||| || ||| Sbjct 149334 ATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGTCAATACGTTGAAT 149275 Query 22802 TTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATC 22861 ||||||| ||| | ||||| | || | ||| || ||| ||| || ||| ||||| Sbjct 149274 TTGTTGCTGATAGATTATTAGTAGCATTTGGTAATAAGAAGGTTTACAATGTCACTAATC 149215 Query 22862 CATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAG 22921 ||||||| | |||||| |||||| | | || |||||||| ||||||||||| |||| Sbjct 149214 CATTTGATTTCATGGAAAACATTTCATTAGCTGGTAAGACCAACTTCTTCGAAAAGAGAG 149155 Query 22922 TTGGTGAATACCAAAAAGCAGGTGTTATGG--ATGCAT--TGAATGA--TAGTTCAAAAC 22975 || ||| || ||||| || |||||||||| | |||| ||| | |||||| || | Sbjct 149154 TTTCTGATTATCAAAAGGCTGGTGTTATGGCTAAGCATAACGAACCAACTAGTTCCAACC 149095 Query 22976 ACGGATTTACATTAGATGAAGAATTTTAA 23004 | | ||| | || |||||||| || ||| Sbjct 149094 ATGACTTTTCCTTTGATGAAGATTTCTAA 149066 Score = 156 bits (172), Expect = 1e-32 Identities = 1132/1801 (63%), Gaps = 60/1801 (3%) Strand=Plus/Minus Query 363050 ATCATGTTGATCCGGCAGTTG-TATCCATCAAGG--TTGTTCAGGGTCTATATGATGGTG 363106 ||||||||||| || |||| ||| |||| | || || ||| | ||| |||||| Sbjct 193401 ATCATGTTGAT---GCTGTTGCTATTACTCAAAGAGTTATTTCTGGTGTTTATCATGGTG 193345 Query 363107 TTACAACTGTTCAGCTAGACAATCTTGCCGTAGAAACTGCAACTTATCTGACCATGACGC 363166 | |||||| || | |||| ||| | || | |||||||| ||||| |||| | | | Sbjct 193344 TCACAACTATTGAATTAGATAATTTAGCTGCTGAAACTGCTGCTTATATGACTACTATTC 193285 Query 363167 ATCCTGATTACTCCAAACTGGCTGCTCGCATTGCAGTTTCGTCTCTTCATAAAATGAC-A 363225 |||| ||||| | | | || || | ||||| ||||| | | |||||| || | Sbjct 193284 ATCCAGATTATGCTATCTTAGCAGCCAGAATTGCTGTTTCAAATTTACATAAACAAACTA 193225 Query 363226 TCAAATAAGTTTTCCA---GTGTCATGGATAGTCTGTATAACTATGTCAATACAAAGACC 363282 |||| || ||| || | || | | || | ||| | ||||| ||| |||| || Sbjct 193224 CCAAACAATTTTCACAAGTGAGTAAAGAAT----TATATGAATATGTTAATCCAAAAACT 193169 Query 363283 GGTAAGTGGTCACCACTCATTGCCGATGACATTATTGAATGTATCCGTTCTAA---TGCG 363339 | | || || | ||| | | || | | ||| |||| || ||| | | Sbjct 193168 GATTTACATTCTCCTATGATTTCTAAGGAAACTTATGA---TATCATTTGTAAACATTCC 193112 Query 363340 GAAGTTTTCGATGACGTTATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATAT 363399 |||| || || | || |||||| ||| | | ||| || |||||| | Sbjct 193111 GAAGAATTAAATTCTGCAATTGTTTATGATCGTGATTTTAATTATAATTATTTCGGTTTC 193052 Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| |||| | |||||| ||| ||| | |||||| | ||| |||| | || || Sbjct 193051 AAGACTTTGGAAAGATCCTATTTATTACGTGTTAATGGTAAAGTTGCTGAAAGACCACAA 192992 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGA----T 363515 ||| | | ||| | |||||||||||||| ||| | |||| | || || || | Sbjct 192991 CATTTAATCATGAGAGTTGCTATTGGTATTCATGGT---GATGAT-ATTCCAAGAGTTAT 192936 Query 363516 TGAAACATATAAGCTTCTAAGTGCTCGTG-TATTC-ACGCACGCCACGCCAACAATGTAC 363573 |||| | ||||| || | || | |||| || || | | ||||| | | Sbjct 192935 TGAATCTTATAA--TTTAATGTCCCAAAAATATTTTACTCATGGTTCTCCAACTTTATTT 192878 Query 363574 AATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT-CTAAAAATGAAGGACGA 363632 |||||||| |||| || ||||| ||||||||||| |||||| | ||||||||| || Sbjct 192877 AATGCTGGTACTCCAAACCCACAAATGTCTTCTTG-TTTCTTAGTTGCAATGAAGGAAGA 192819 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 ||| || || ||||| | ||| || | |||| ||||||| | || || |||| ||| || Sbjct 192818 TTCTATTGATGGTATTTATGATACTTTAAAGACTTGTGCTTTAATCTCAAAGAGTGCTGG 192759 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGCACAG 363751 || |||||| || || || || |||||| ||| | ||| ||| || || Sbjct 192758 TGGTATTGGTTTACATATTCATAACATTCGTGCCACTG-GTGCTTATATTGCTGGTACTA 192700 Query 363752 GGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || ||| || || || | |||| ||| | ||||| || |||||||||| | || Sbjct 192699 ATGG-TACTTCCAACGGTATCATTCCTATGGTCCGTGTCTTCAACAATACTGCTCGTTAT 192641 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 || || || ||||| ||| | ||| || |||||| | ||| | || || ||| Sbjct 192640 GTTGATCAAGGTGGTAACAAGAGACCAGGTGCTTTTGCTCTTTATTTAGAACCATGGCAT 192581 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 || ||||||||||| || |||| | | || || || ||||| ||| | | ||| Sbjct 192580 GCTGATATTTTTGATTTCATTGATATTAGAAAGAATCAAGGTAAAGAAGAAATTAGAGCA 192521 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA--- 363987 | ||| | ||| || | ||| || | || || |||||| | || || | Sbjct 192520 AGAGATTTATTCCCAGCTTTATGGATTCCAGATTTATTCATGAAGAGAGTTGAACAAAAC 192461 Query 363988 GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 ||| ||||| | | || | ||| | ||| |||||| | | ||||| | ||| Sbjct 192460 GGT---GATTGGACTTTATTCTCTCCAAATGAAGCTCCAGGATTACCAGATGTTTACGGT 192404 Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107 || || | || |||| ||||| |||||| ||||| | | | | || || Sbjct 192403 GATGAATTTGAGCAATTATATGAAAAATATGAAAGAGAGGGTCGTGGTAGACAAACCGTT 192344 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || || || |||||| | |||| | || | || | ||| || || || || | | Sbjct 192343 AAAGCTCAAAAATTATGGTATTCCATTTTAGAAGCTCAAACTGAAACTGGTACTCCATTT 192284 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||||| || |||||| | || || | || ||||| || || || | |||| ||| | Sbjct 192283 ATGTTATATAAAGATGCTTGTAATAGAAAATCCAATCAAAAGAACTTGGGTATGATTAAA 192224 Query 364228 CAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 ||| ||||| || ||| ||||||| | | || || || ||| || || Sbjct 192223 TCTTCCAATTTATGTTGTGAAATTGTTGAATATTCTTCCCCAGAAGAAGTTGCTGTTTGC 192164 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAAGATGGT----ACTTTTG---- 364336 || | || || || || | || | ||||| |||||||| | | | ||| Sbjct 192163 AATTTAGCTTCAATTGCTTTACCATCATTTGTTGAAAAAGATGATGATCATTCTTGGTAT 192104 Query 364337 -ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATC 364395 | | | | | |||| || || | || |||| | ||| | | || || || Sbjct 192103 AATTTCGAAAAATTACATGAAGTCACAAAGGTTGTTACTCGTAATTTAAATAAAGTCATT 192044 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATT 364455 || || ||||||||| |||| ||||| || ||| || ||| || | || ||| Sbjct 192043 GATCGTAACTATTATCCAGTTCCAGAAGCTAAGACTTCCAACATGAAGAATAGACCAATT 191984 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA-TGGCATTTGATTC 364514 | | | ||||| || || | || || || ||| || |||| | |||||||||| Sbjct 191983 GCTTTAGGTGTTCAAGGTTTAGCCGATTCCTTCATG-GCCTTAAGATTACCATTTGATTC 191925 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGAC 364574 | || ||| | | |||| | | || |||||||| || ||| ||| || | Sbjct 191924 TCAAGAAGCTAGAGAATTAAACATTCAAATTTTTGAAACCATTTATCATGCAGCTGTTGA 191865 Query 364575 TGCTTCGTGTGATTTGGC-AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTC 364633 |||| ||| || || || | |||| | ||| || || | || ||||| Sbjct 191864 AACTTCTATTGAATTAGCTCAAGAAGAAGGTGCA-TACCAAACATACCAAGGTTCCCCAG 191806 Query 364634 TTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACT 364693 |||||| ||| ||| || |||||| |||||||| | |||| ||| |||| | | Sbjct 191805 CTTCGCAAGGATTATTACAATTTGATTTATGGAATAGAAAGCCAACTGAATTATGGGATT 191746 Query 364694 GGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGC 364753 ||||||| || || | || |||||| | || || || | || | Sbjct 191745 GGGATACATTAAAACAAAATATGGCCAAACATGGTTTAAGAAATTCTCTTTTGGTTGCTC 191686 Query 364754 CCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTA 364813 | ||||| || ||||||||| | || ||| | || || || || || || ||||| | || Sbjct 191685 CTATGCCAACTGCTTCTACTTCCCAAATCTTGGGTAATAATGAATGTTTTGAACCATATA 191626 Query 364814 C 364814 | Sbjct 191625 C 191625 >seq35 Length=227830 Score = 86.0 bits (94), Expect = 2e-11 Identities = 113/153 (74%), Gaps = 8/153 (5%) Strand=Plus/Plus Query 131386 AGAGTTCTTATTATCGATGAAGTTTCTATGCTTGATGGAGAATTATTTAATAAACTTGAA 131445 ||||| ||||| ||||||||| |||| ||| | || || || ||| | ||||| ||||| Sbjct 33159 AGAGTACTTATCATCGATGAAATTTCCATGGTAGACGGTGAGTTACTAGATAAA-TTGAA 33217 Query 131446 A-AAATCGCACAGAGTATTCGATCAAATTCTAG---ACCATTTGGTGGAATTCAACTAAT 131501 |||| | | || |||||| || || || |||||||||||| |||||| || | Sbjct 33218 TGAAATTGGGAAAAGAATTCGA---AAGTCGAGCCTACCATTTGGTGGTATTCAAATAGT 33274 Query 131502 TCTCGTTGGAGACTTTTATCAGCTACCACCTGT 131534 | | ||||||||||||||| |||| || || Sbjct 33275 TGTATGTGGAGACTTTTATCAATTACCTCCAGT 33307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348657031472