Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq253 109 5e-19 seq242 100 2e-16 >seq253 Length=293773 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| ||||| || || | |||||| | ||||| || | Sbjct 106759 AATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAATCTTC 106700 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| || ||| || || ||||| || || || ||||| Sbjct 106699 TGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCA 106640 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| | | || | || || || ||| | ||||||| |||| | | | | || || | Sbjct 106639 ACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAA-CTTTATCTGACTACA 106581 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||| |||||||| | ||||| || |||||||||||||| || Sbjct 106580 ACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106532 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || |||||||| || | ||||| | ||||| || | Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| || || ||||| || || || |||||| Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | | || | || || || ||| | ||||||| |||| | | | | || || || Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAA-CTTTATCTGACTACAA 106352 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| |||||||| | ||||| || |||||||||||||| || Sbjct 106351 CATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106304 >seq242 Length=99814 Score = 100 bits (110), Expect = 2e-16 Identities = 214/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 133007 CTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACC-GGGACACTCGTC 133065 |||||||||||| |||||||| || ||||| || || | ||||| | || | | Sbjct 8303 CTTTCGTATAATTCTTCAAATTCATCACCATAACAATCACTTAAACCACTGGCA-ACATT 8361 Query 133066 AGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGT 133125 ||| | | |||||||| | || || | | || || ||||| ||||| |||| | Sbjct 8362 TGGAGAAAATAATGACCAATCTTTATCTTCTTTAACTCTCTTCATAAACAAATCAGGTAT 8421 Query 133126 CCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTC--CGCGCCCATATTTCGTT-T 133182 ||| | || |||||||||| | || ||| ||| ||| | ||||| ||| || | Sbjct 8422 CCATAATCCATAAAATAAATCTCTAG--TTC-TATGTTCTTCATTCCCATGATTCTTTCT 8478 Query 133183 CAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242 || ||||||| | ||| || ||| |||||||||| || |||||||| || || || || Sbjct 8479 CATTTCCAAAATATCAAATATATCTCCATGCCAAGGTTCAATATATACCGCGAATGCTCC 8538 Query 133243 TTTCCTTTT---ACCTCCCTGATCCACATGTCTAAGCATGCTGTTGAAGACACGCAATGC 133299 | | ||| |||||| ||||| |||| ||| | | |||| || || | ||| Sbjct 8539 TGGACGTTTCCCACCTCCTTGATCAACATATCTTGCCGTATTGTTAAATACTCTCAACAT 8598 Query 133300 AGGACCCAATCC 133311 ||| ||||||| Sbjct 8599 TGGAACCAATCC 8610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934449005880