Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq253 109 5e-19
seq242 100 2e-16
>seq253
Length=293773
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | || || ||||| ||||| || || | |||||| | ||||| || |
Sbjct 106759 AATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAATCTTC 106700
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||| || | |||||| || ||| || || ||||| || || || |||||
Sbjct 106699 TGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCA 106640
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||| | | || | || || || ||| | ||||||| |||| | | | | || || |
Sbjct 106639 ACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAA-CTTTATCTGACTACA 106581
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||| ||||| |||||||| | ||||| || |||||||||||||| ||
Sbjct 106580 ACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106532
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || |||||||| || | ||||| | ||||| || |
Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || ||| || ||| || || ||||| || || || ||||||
Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
|| | | || | || || || ||| | ||||||| |||| | | | | || || ||
Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAA-CTTTATCTGACTACAA 106352
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| ||||| |||||||| | ||||| || |||||||||||||| ||
Sbjct 106351 CATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106304
>seq242
Length=99814
Score = 100 bits (110), Expect = 2e-16
Identities = 214/312 (69%), Gaps = 11/312 (4%)
Strand=Plus/Plus
Query 133007 CTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACC-GGGACACTCGTC 133065
|||||||||||| |||||||| || ||||| || || | ||||| | || | |
Sbjct 8303 CTTTCGTATAATTCTTCAAATTCATCACCATAACAATCACTTAAACCACTGGCA-ACATT 8361
Query 133066 AGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGT 133125
||| | | |||||||| | || || | | || || ||||| ||||| |||| |
Sbjct 8362 TGGAGAAAATAATGACCAATCTTTATCTTCTTTAACTCTCTTCATAAACAAATCAGGTAT 8421
Query 133126 CCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTC--CGCGCCCATATTTCGTT-T 133182
||| | || |||||||||| | || ||| ||| ||| | ||||| ||| || |
Sbjct 8422 CCATAATCCATAAAATAAATCTCTAG--TTC-TATGTTCTTCATTCCCATGATTCTTTCT 8478
Query 133183 CAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242
|| ||||||| | ||| || ||| |||||||||| || |||||||| || || || ||
Sbjct 8479 CATTTCCAAAATATCAAATATATCTCCATGCCAAGGTTCAATATATACCGCGAATGCTCC 8538
Query 133243 TTTCCTTTT---ACCTCCCTGATCCACATGTCTAAGCATGCTGTTGAAGACACGCAATGC 133299
| | ||| |||||| ||||| |||| ||| | | |||| || || | |||
Sbjct 8539 TGGACGTTTCCCACCTCCTTGATCAACATATCTTGCCGTATTGTTAAATACTCTCAACAT 8598
Query 133300 AGGACCCAATCC 133311
||| |||||||
Sbjct 8599 TGGAACCAATCC 8610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429934449005880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |