Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq253 132 4e-26 seq254 113 4e-20 >seq253 Length=293773 Score = 132 bits (146), Expect = 4e-26 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || ||||| |||| || | ||||| || || ||| Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || | || | || | |||| ||| || || ||||| ||||||||||||| Sbjct 106242 GACACTATTGA-TAACGTTAAATCTAAAATTCAA-GATAAGGAAGGTATTCCACCTGACC 106185 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||||||||||||| | | ||| | || |||| Sbjct 106184 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA 106125 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || | || ||||| | || ||||||| || Sbjct 106124 ACATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGG 106076 Score = 131 bits (144), Expect = 1e-25 Identities = 182/253 (72%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 24977 ATAATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCAT 25036 ||||| | |||| | | ||||||||||| || || || ||||| |||||||| | || Sbjct 106780 ATAATATCTACATACCTATACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTAT 106721 Query 25037 CACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTG 25092 || | ||||| || || |||||||| || || |||| || | |||| ||| | Sbjct 106720 TACCTTAGAAGTTGAATCTTCTGACACCATTGATAACGTCA---AATCTAAAATTCAA-G 106665 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 | || ||||| || |||||||| ||||| || | || || || || ||||||||||||| Sbjct 106664 ATAAGGAAGGTATCCCACCTGATCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAG 106605 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAA 25212 ||| | | ||| | || ||||| || ||||| ||||| || ||||||| || ||| Sbjct 106604 ATGGTAGAACTTTATCTGACTACAACATCCAAAAGGAATCTACTTTACATTTGGTTTTAA 106545 Query 25213 GGCTAAGAGGAGG 25225 | | ||||| || Sbjct 106544 GATTGAGAGGTGG 106532 Score = 129 bits (142), Expect = 5e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || ||||| |||| || | ||||| || || ||| Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || | || | || | |||| ||| || || ||||| || |||||||| | Sbjct 106470 GACACTATTGA-TAACGTTAAATCTAAAATTCAA-GATAAGGAAGGTATCCCACCTGATC 106413 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||||||||||||| | | ||| | || |||| Sbjct 106412 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA 106353 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || ||||||| || |||| | ||||| || Sbjct 106352 ACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106304 >seq254 Length=76587 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || || ||||| || || ||||| |||| || | ||||| || || Sbjct 43144 AAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATC 43085 Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || ||||| || || || || || || ||| || || ||||| ||||||||| Sbjct 43084 TTCCGACACCATTGA--CAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCT 43027 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || ||||| | | || ||||| || || ||||||||||||| | | ||| | || Sbjct 43026 GATCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGAC 42967 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| ||||| || |||| || || |||| ||||||| || Sbjct 42966 TACAACATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGG 42914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326436769240