Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq253 132 4e-26
seq254 113 4e-20
>seq253
Length=293773
Score = 132 bits (146), Expect = 4e-26
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| || || ||||| |||| || | ||||| || || |||
Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243
Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | || | || | |||| ||| || || ||||| |||||||||||||
Sbjct 106242 GACACTATTGA-TAACGTTAAATCTAAAATTCAA-GATAAGGAAGGTATTCCACCTGACC 106185
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || || || |||||||||||||||| | | ||| | || ||||
Sbjct 106184 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA 106125
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| ||||| || | || ||||| | || ||||||| ||
Sbjct 106124 ACATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGG 106076
Score = 131 bits (144), Expect = 1e-25
Identities = 182/253 (72%), Gaps = 8/253 (3%)
Strand=Plus/Minus
Query 24977 ATAATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCAT 25036
||||| | |||| | | ||||||||||| || || || ||||| |||||||| | ||
Sbjct 106780 ATAATATCTACATACCTATACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTAT 106721
Query 25037 CACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTG 25092
|| | ||||| || || |||||||| || || |||| || | |||| ||| |
Sbjct 106720 TACCTTAGAAGTTGAATCTTCTGACACCATTGATAACGTCA---AATCTAAAATTCAA-G 106665
Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152
| || ||||| || |||||||| ||||| || | || || || || |||||||||||||
Sbjct 106664 ATAAGGAAGGTATCCCACCTGATCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAG 106605
Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAA 25212
||| | | ||| | || ||||| || ||||| ||||| || ||||||| || |||
Sbjct 106604 ATGGTAGAACTTTATCTGACTACAACATCCAAAAGGAATCTACTTTACATTTGGTTTTAA 106545
Query 25213 GGCTAAGAGGAGG 25225
| | ||||| ||
Sbjct 106544 GATTGAGAGGTGG 106532
Score = 129 bits (142), Expect = 5e-25
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| || || ||||| |||| || | ||||| || || |||
Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471
Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | || | || | |||| ||| || || ||||| || |||||||| |
Sbjct 106470 GACACTATTGA-TAACGTTAAATCTAAAATTCAA-GATAAGGAAGGTATCCCACCTGATC 106413
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || || || |||||||||||||||| | | ||| | || ||||
Sbjct 106412 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA 106353
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| ||||| || ||||||| || |||| | ||||| ||
Sbjct 106352 ACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106304
>seq254
Length=76587
Score = 113 bits (124), Expect = 4e-20
Identities = 166/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| ||||||||| || || ||||| || || ||||| |||| || | ||||| || ||
Sbjct 43144 AAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATC 43085
Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|| ||||| || || || || || || ||| || || ||||| |||||||||
Sbjct 43084 TTCCGACACCATTGA--CAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCT 43027
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| ||||| | | || ||||| || || ||||||||||||| | | ||| | ||
Sbjct 43026 GATCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGAC 42967
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| || ||||| ||||| || |||| || || |||| ||||||| ||
Sbjct 42966 TACAACATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGG 42914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433326436769240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |