Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq46 268 1e-66 >seq46 Length=215403 Score = 268 bits (296), Expect = 1e-66 Identities = 626/928 (67%), Gaps = 21/928 (2%) Strand=Plus/Plus Query 92781 ATTCTTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGT 92840 || |||| |||||||||| ||||| || || |||| | ||||| ||||| || || Sbjct 149117 ATGCTTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGT 149176 Query 92841 CTTTCCTTCCAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATACT 92897 ||| || | || || || | ||| | | | |||||| || | || ||| || Sbjct 149177 CTTACCAGCTAATGAAAT-GTTTTCCATGAAATCAAATGGATTAGTGACATTGTAAACCT 149235 Query 92898 TTTCACCGATCAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATC 92956 | | | | ||| | ||| |||||||||||||| |||||||| | ||| ||| |||| Sbjct 149236 TCTTATT-ACCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATT 149294 Query 92957 AAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCG 93016 || | ||| ||||| |||| | || ||||||| || || || ||||| || || || Sbjct 149295 AACTTACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCA 149354 Query 93017 ATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG---TGGTTTTTGTACG 93073 || |||| || || ||| | | || || | || | | || |||| | | | | Sbjct 149355 ATAGCAACAGCCTCAA-CAATAAT-CTTTT-CAATAATTTCTGCAGCTGGTCTATTTTCC 149411 Query 93074 ACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAAC 93133 | || | | | ||| || ||||| || |||||||||||||| |||| | || || Sbjct 149412 AAATGGGAGAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAAT 149471 Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 || ||| |||||||||||| || | | |||| ||||| | |||||| || || || Sbjct 149472 TCGTTGGAGAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCG 149531 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || |||| || || |||||||| || || || ||||| || | | ||| ||||| Sbjct 149532 AATGAACCACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAAT 149591 Query 93254 TTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 || || ||| |||||||| | | |||||| || || || || ||||||| || Sbjct 149592 AAGGCTTCATCGTCTG-TGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGG 149650 Query 93313 TAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATC 93372 | || ||||| || || | || || || | | ||| || || || || Sbjct 149651 AATATGGTCAATAGCATTGAACAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTC 149710 Query 93373 GATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAA 93432 |||||| || ||||| |||||||||| | || ||||| |||||||| || ||||| Sbjct 149711 GATTAAAAGGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAA 149770 Query 93433 ACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGAC 93492 | | ||||| | || || ||||| || || | || || | ||||||||| || Sbjct 149771 GGACTTGGCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAAC 149830 Query 93493 TATACCATCGGATGCTGCaaaaaaaGCCAATAT---ATGCTTTATAAAATGTTTCTCATC 93549 |||||||| || || ||||| || || | || | | | ||| ||| || || Sbjct 149831 GATACCATCTGAAGCAGCAAAGAACGCAAGGATTCTAGAAATGAAGAAACGTTCGTCGTC 149890 Query 93550 ATCTTTAAGCT-TATC-CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTC 93607 || |||| | | || ||||||| || |||||| | ||||| ||||||| ||||| Sbjct 149891 AT--TTAATTTATTTCTCCAATCGTTTAAATCTTTACTTAAATCGATTTCTTCGGCAGTC 149948 Query 93608 CAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAAT 93667 || || || ||||| || |||||||| | | ||| || || || || |||||| || Sbjct 149949 CAGAAAGAAGCTTCAGCCTTTTTGTAAAATTGCCAAATTTCATGGAATCTAATTGGGAAC 150008 Query 93668 ATGACAAAACGATTAGGGTTATCTTTTA 93695 |||||||||||| |||||| || |||| Sbjct 150009 ATGACAAAACGACGAGGGTTCTCCTTTA 150036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858739615040