Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq254 172 1e-37 seq253 145 1e-29 >seq254 Length=76587 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || |||||||||| || || || ||||||||||| || || || | || || |||||| Sbjct 42929 AAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 42988 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| ||||| || || || || | ||||||||| || |||||||| |||||||| ||| Sbjct 42989 TCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCT 43048 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| | ||||| || |||||||| | ||||| ||||| ||||| ||||| Sbjct 43049 TGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAATGGTC 43108 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || | |||||||||||| || |||||| Sbjct 43109 TTACCAGTTAAGGTCTTGACGAAAATTTGCATT 43141 >seq253 Length=293773 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || ||||| | || || || ||||||||||| || || || | || || ||||| Sbjct 106090 CAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATC 106149 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || || ||||| || | | ||||||||| |||||||| |||||||| || Sbjct 106150 TTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTATC 106209 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || | || ||| || || ||||| | ||||| ||||| || || ||||| Sbjct 106210 TTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGT 106269 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||| ||||| || ||||| Sbjct 106270 CTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || ||||| |||| || || || ||||||||||| || || || | || || |||||| Sbjct 106547 AAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 106606 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || ||||| || | | |||||| || ||||| || |||||||| ||| Sbjct 106607 TCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCT 106666 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || | |||||| || |||||||| | ||||| ||||| ||||| || || Sbjct 106667 TGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTC 106726 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || | || || ||||| || |||||| Sbjct 106727 TTACCGGTTAAAGTTTTAACGAAGATTTGCATT 106759 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || ||||| |||| || || || ||||||||||| || || || | || || |||||| Sbjct 106319 AAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCT 106378 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || ||||| || | | |||||| || ||||| || |||||||| ||| Sbjct 106379 TCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCT 106438 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || | || ||| || || ||||| | ||||| ||||| || || ||||| Sbjct 106439 TGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTC 106498 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||| ||||| || ||||| Sbjct 106499 TTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618989997120