Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq254 93.3 3e-14 seq253 84.2 2e-11 >seq254 Length=76587 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| || | || || ||||| || || ||||||||| | ||| ||| | Sbjct 43143 AAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCT 43084 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTA 21947 | || || | | | || | || || || ||||| || ||| | ||||| Sbjct 43083 TCCGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTG-- 43026 Query 21948 AACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGAT 22007 | ||||| ||| | ||||||||||| || ||| |||||||| | |||| | | || Sbjct 43025 -ATCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGAC 42967 Query 22008 TACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || || |||||||||||| | || |||| ||| | ||| |||| || Sbjct 42966 TACAACATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGG 42914 >seq253 Length=293773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||| ||||| || || || |||||| | ||| ||| | | Sbjct 106759 AATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAATCTTC 106700 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || || | | | | || |||||| ||||| || ||| | ||||| | Sbjct 106699 TGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTG---A 106643 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | | ||||| ||||| |||||| |||||||| | |||| | | || || Sbjct 106642 TCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTA 106583 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| || || |||||||||||| | ||| |||| ||| | || |||| || Sbjct 106582 CAACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106532 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || ||||| || || |||||||| | ||| ||| | | Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | |||| |||||| ||||| || ||| | ||||| | Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTG---AT 106414 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | ||||| ||||| |||||| |||||||| | |||| | | || ||| Sbjct 106413 CAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTAC 106354 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || |||||||||||| | ||| |||| ||| | || |||| || Sbjct 106353 AACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123508064784