Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq253 123 6e-23
seq254 100 7e-16
>seq253
Length=293773
Score = 123 bits (136), Expect = 6e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || |||||||||||||| || |||||
Sbjct 106567 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106626
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| | ||| |||||| | |||||| ||||| ||||| || ||||| | ||| |||||
Sbjct 106627 GATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTT 106686
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || ||||| ||||| | || || ||||| ||||| | ||| || ||
Sbjct 106687 ATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAAC 106746
Query 288462 GAATATCTGCATT 288474
||| || ||||||
Sbjct 106747 GAAGATTTGCATT 106759
Score = 122 bits (134), Expect = 2e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || |||||||||||||| || |||||
Sbjct 106339 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106398
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| | ||| |||||| | |||||| ||||| ||||| || ||||| | ||| |||||
Sbjct 106399 GATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTT 106458
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || ||||| ||||| | || || ||||| || || | ||||| ||
Sbjct 106459 ATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAAC 106518
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 106519 GAAGATTTGCAT 106530
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || |||||||||||||| || |||||
Sbjct 106111 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106170
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| | ||| ||||| | ||| || ||||| ||||| || ||||| | ||| |||||
Sbjct 106171 GATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGAATTTTAGATTTAACGTT 106230
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || ||||| ||||| | || || ||||| || || | ||||| ||
Sbjct 106231 ATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAAC 106290
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 106291 GAAGATTTGCAT 106302
>seq254
Length=76587
Score = 100 bits (110), Expect = 7e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || ||||||||||| || || || ||
Sbjct 42949 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAA 43008
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| | | |||||| | ||| || ||||| ||||| ||||| || | ||| || ||
Sbjct 43009 GATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGGATCTTGGATTTGACATT 43068
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| ||||| ||||| | || || ||||| || || | ||||||||
Sbjct 43069 GTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGAC 43128
Query 288462 GAATATCTGCATT 288474
||| || ||||||
Sbjct 43129 GAAAATTTGCATT 43141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179649926160688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |