Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq253 123 6e-23 seq254 100 7e-16 >seq253 Length=293773 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || |||||||||||||| || ||||| Sbjct 106567 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106626 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | ||| |||||| | |||||| ||||| ||||| || ||||| | ||| ||||| Sbjct 106627 GATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTT 106686 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| ||||| | || || ||||| ||||| | ||| || || Sbjct 106687 ATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAAC 106746 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 106747 GAAGATTTGCATT 106759 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || |||||||||||||| || ||||| Sbjct 106339 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106398 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | ||| |||||| | |||||| ||||| ||||| || ||||| | ||| ||||| Sbjct 106399 GATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTT 106458 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | || || ||||| || || | ||||| || Sbjct 106459 ATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAAC 106518 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 106519 GAAGATTTGCAT 106530 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || |||||||||||||| || ||||| Sbjct 106111 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106170 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | ||| ||||| | ||| || ||||| ||||| || ||||| | ||| ||||| Sbjct 106171 GATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGAATTTTAGATTTAACGTT 106230 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | || || ||||| || || | ||||| || Sbjct 106231 ATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAAC 106290 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 106291 GAAGATTTGCAT 106302 >seq254 Length=76587 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||||||| || || || || Sbjct 42949 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAA 43008 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | |||||| | ||| || ||||| ||||| ||||| || | ||| || || Sbjct 43009 GATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGGATCTTGGATTTGACATT 43068 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| ||||| | || || ||||| || || | |||||||| Sbjct 43069 GTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGAC 43128 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 43129 GAAAATTTGCATT 43141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649926160688