Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq253 149 4e-31 seq254 131 1e-25 >seq253 Length=293773 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||||||| ||||| | ||||| || ||||| |||||||| || Sbjct 106532 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106591 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||||||| |||||| | || ||||| ||||| || ||| Sbjct 106592 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGG 106651 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| ||| || | || || || || | ||| || Sbjct 106652 ATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACT 106711 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| || ||||| || | |||||| || || |||||||| Sbjct 106712 TCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCAT 106758 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||||||| ||||| | ||||| || ||||| |||||||| || Sbjct 106304 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106363 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||||||| |||||| | || ||||| ||||| || ||| Sbjct 106364 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGG 106423 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| ||| || | || ||||| || | ||| || Sbjct 106424 ATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACT 106483 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| |||||||| ||||| || | || || || || ||||||||| Sbjct 106484 TCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCATA 106531 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || ||||| || | ||||| || ||||| |||||||| || Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||||||| |||||| | || ||||| |||||||| |||| Sbjct 106136 AAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGA 106195 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| ||| || | || ||||| || | ||| || Sbjct 106196 ATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACT 106255 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| |||||||| ||||| || | || || || || ||||||||| Sbjct 106256 TCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCATA 106303 >seq254 Length=76587 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||| || || || | ||||| || ||||| |||||||| || Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||||||||| || ||||| | || || | ||||| || |||| Sbjct 42974 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 43033 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| ||| ||| | || || || ||| | ||| || Sbjct 43034 ATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACT 43093 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 |||||||||||||| ||||| || | || || || ||||||||||| |||| Sbjct 43094 TCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTTTG 43145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390710708360