Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq253 100 7e-16 seq254 95.1 3e-14 >seq253 Length=293773 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | || || |||||||||| ||||||||||| ||||| || || Sbjct 106087 TCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 106146 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || |||||||| | ||| || ||||| || ||| ||||| Sbjct 106147 ATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTT 106206 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || || ||| || | ||||| | | ||| || || || || || Sbjct 106207 ATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 106266 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | || || || || ||||| Sbjct 106267 GGTCTTACCAGTTAAGGTCTTAACGAAGATTTG 106299 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || |||||||||| ||||||||||| ||||| || |||||||| | || || || Sbjct 106561 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACC 106620 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 |||||||| | ||| || || || || || ||||| || ||||| || || Sbjct 106621 AGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTT 106680 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| || | |||||| | | ||| || || || || || |||||||| || | ||| Sbjct 106681 GACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGT 106740 Query 199612 TTTCACAAAAATTTG 199626 ||| || || ||||| Sbjct 106741 TTTAACGAAGATTTG 106755 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || |||||||||| ||||||||||| ||||| || |||||||| | || || || Sbjct 106333 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACC 106392 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 |||||||| | ||| || || || || || ||||| || ||||| || || Sbjct 106393 AGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTT 106452 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| || | ||||| | | ||| || || || || || |||||||| || | || Sbjct 106453 AACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGT 106512 Query 199612 TTTCACAAAAATTTG 199626 || || || ||||| Sbjct 106513 CTTAACGAAGATTTG 106527 >seq254 Length=76587 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | ||| | ||| || |||||||||| ||||||||||| ||||| || || Sbjct 42925 TCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 42984 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || || ||||| | | || || || || ||| ||||| Sbjct 42985 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 43044 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| || || || | |||||| | | ||| || || || || || Sbjct 43045 ATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAAT 43104 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 |||||||| || | || || || |||||||| |||||| | ||| Sbjct 43105 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTG---CATTTTTGGCTT 43149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917128939832