Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq46 210 3e-49 seq217 98.7 1e-15 >seq46 Length=215403 Score = 210 bits (232), Expect = 3e-49 Identities = 833/1297 (64%), Gaps = 29/1297 (2%) Strand=Plus/Minus Query 111720 CCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCA 111779 ||||| | || || |||||||| |||| || |||||||| ||||||| | ||||| Sbjct 192889 CCAACTTTATTTAATGCTGGTACTCCAAACCCACAAATGTCTTCTTGTTTCTTAGTTGCA 192830 Query 111780 AACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCA 111839 | ||||| ||||| || |||| ||||| | ||| | | ||||| ||||||| Sbjct 192829 ATGAAGGAAGATTCTATTGATGGTATTTATGATACTTTAAAGACTTGTGCTTTAATCTCA 192770 Query 111840 AAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTAT 111898 ||| | ||||||||||| || | || || ||| | | | ||| || || || ||| Sbjct 192769 AAGAGTGCTGGTGGTATTGGTTTACATATTCATAACATTCGTGCC-ACTGGTGCTTATAT 192711 Query 111899 TAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 111958 | ||||| |||||| || | ||||| ||||| ||| | || || || ||| || Sbjct 192710 TGCTGGTACTAATGGTACTTCCAACGGTATCATTCCTATGGTCCGTGTCTTCAACAATAC 192651 Query 111959 AGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCT 112012 || || ||||| | |||| || || |||| || || | || | ||| | Sbjct 192650 TGCTCGTTATGTTGATCAAGGTG---GTAACAAGAGACCAGGTGCTTTTGCTCTTTATTT 192594 Query 112013 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGA 112072 || |||||||| || ||||| | || ||| |||| | | || |||||| | || Sbjct 192593 AGAACCATGGCATGCTGATATTTTTGATTTCATTGATATTAGAAAGAATCAAGGTAAAGA 192534 Query 112073 GGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 112132 || | | ||| | ||| | ||| | |||||||||||| | ||||||||||| Sbjct 192533 AGAAATTAGAGCAAGAGATTTATTCCCAGCTTTATGGATTCCAGATTTATTCATGAAGAG 192474 Query 112133 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192 |||||| | | || ||||| || | || | |||| | | || || || | | || Sbjct 192473 AGTTGAACAAAACGGTGATTGGACTTTATTCTCTCCAAATGAAGCTCCAGGATTACCAGA 192414 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC 112252 || ||||| || ||||| | || ||| || || ||| |||| | | Sbjct 192413 TGTTTACGGTGATGAATTTGAGCAATTATATGAAAAATATGAAAGAGAGGGTCGTGGTAG 192354 Query 112253 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 || || |||| | | ||| | | ||| | | ||||||| || ||||| Sbjct 192353 ACAAACCGTTAAAGCTCAAAAATTATGGTATTCCATTTTAGAAGCTCAAACTGAAACTGG 192294 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 ||| |||| |||| | || ||||| || ||||| ||| ||||||||||| ||||| Sbjct 192293 TACTCCATTTATGTTATATAAAGATGCTTGTAATAGAAAATCCAATCAAAAGAACTTGGG 192234 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 | |||| || |||||| | ||| ||||| | |||| | | | ||| || Sbjct 192233 TATGATTAAATCTTCCAATTTATGTTGTGAAATTGTTGAATATTCTTCCCCAGAAGAAGT 192174 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA- 112491 ||||| || || | || ||||| ||| | || | ||| || | ||| | || Sbjct 192173 TGCTGTTTGCAATTTAGCTTCAATTGCTTTACCATCATTTGTTGA--AAAAGATGATGAT 192116 Query 112492 CATT-------TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544 |||| | ||| |||||| | || ||||| || || ||| || || || Sbjct 192115 CATTCTTGGTATAATTTCGAAAAATTACATGAAGTCACAAAGGTTGTTACTCGTAATTTA 192056 Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAG 112603 || | ||| |||||| | || | ||| || ||| ||| ||| | || || |||| Sbjct 192055 AATAAAGTCATTGATCGTAACTATTATCCAGTTCCAGA-AGCTAAGACTTCCAACATGAA 191997 Query 112604 ACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCC 112662 | | ||||||| | | ||||| |||||| | || ||| ||||| | || Sbjct 191996 GAATAGACCAATTGCTTTAGGTGTTCAAGGTTTAGCCGATTCCTTCATGGCCTTAAGATT 191937 Query 112663 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATC 112722 || |||||||||| | ||||| | ||| | || | || ||||| || || |||| Sbjct 191936 AC-CATTTGATTCTCAAGAAGCTAGAGAATTAAACATTCAAATTTTTGAAACCATTTATC 191878 Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 | || ||| |||| | | || || || | | || ||| |||| |||| | Sbjct 191877 ATGCAGCTGTTGAAACTTCTATTGAATTAGCTCAAGAAGAAGGTGCATACCAAACATACC 191818 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC 112842 | ||||| |||||||| ||||| | | ||||||||| | ||| | | || |||| | Sbjct 191817 AAGGTTCCCCAGCTTCGCAAGGATTATTACAATTTGATTTATGGAATAGAAAG-CCAA-C 191760 Query 112843 TTCACTA--CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 112900 | | || || ||||| | | || || || | | ||| | | || Sbjct 191759 TGAATTATGGGATTGGGATACATTAAAACAAAATATGGCCAAACATGGTTTAAGAAATTC 191700 Query 112901 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 ||||||| | || || |||||||| || || || | ||||||||||||||||||||||| Sbjct 191699 TCTTTTGGTTGCTCCTATGCCAACTGCTTCTACTTCCCAAATCTTGGGTAATAATGAATG 191640 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 |||||||| || || | ||||| ||| ||||||| Sbjct 191639 TTTTGAACCATATACTTCAAACATTTATTCGAGAAGA 191603 >seq217 Length=263222 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 163445 GCTGTTGGATACGATCTTTACAGCA-CTGATGAAGTTGTTATTCCACCTACACACCGCGC 163503 |||| |||||||||||||| ||| | | |||| |||||||||| || | | Sbjct 144142 GCTGCCGGATACGATCTTTAT-GCATCCCAAGAAGGTGTTATTCCAGCTCATGGACAAGG 144200 Query 163504 TCTTATCGGGACGGGTGTAGCCATTGTACTGCCACCGGGTGTCTATGGGCGTGTTGCGCC 163563 ||||||| || | | | ||||| | | || ||| ||||| |||||||| || Sbjct 144201 TCTTATCTCTACTGATATTTCCATTATTGTTCCTGAAGGTACTTATGGTCGTGTTGCTCC 144260 Query 163564 ACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCGGGTGTTATTGATCCCGA 163623 || ||||| | ||||| || || ||||| |||||| |||||||||||| | || Sbjct 144261 TCGTTCTGGATTAGCTGTTAAGCATGGTATTTCTACTGGTGCTGGTGTTATTGATGCTGA 144320 Query 163624 CTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACAAAGACTTTGAGGTAAA 163683 || | |||||||| || || ||| | || |||||| ||| || || ||||| || || Sbjct 144321 TTATAGAGGTGAAGTTAAGGTTGTTTTATTTAATCATTCAGATAAGGATTTTGAAGTTAA 144380 Query 163684 GAGGGGGGAGCGCATCGCACAACTTGTT 163711 | || || | || |||||| | ||| Sbjct 144381 GGCTGGTGATAGAATTGCACAATTGGTT 144408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740103253120