Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq46 221 1e-52 >seq46 Length=215403 Score = 221 bits (244), Expect = 1e-52 Identities = 742/1139 (65%), Gaps = 31/1139 (3%) Strand=Plus/Plus Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 ||| |||| ||| |||||||| | | |||| || | || ||||||||| || ||| Sbjct 191957 ATCGGCTAAACCTTGAACACCTAAAGCAATTGGTCTATTCTTCATGTTGGAA-GTCTT-- 192013 Query 110163 AGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGT 110219 || |||| || || ||| |||| || || ||||| ||| | ||| || ||| Sbjct 192014 AGCTTCTGGAACTGGATAATAGTTACGATCAATGACTTTATTTAAATTACGAGTAACAAC 192073 Query 110220 CTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG-----TTTTCGTCTCCTTATTGA-C 110273 ||| |||| |||||| | ||| ||| ||| || | || || ||| || | | Sbjct 192074 CTTTGTGACTTCATGTAATTTTTCGAAATTATACCAAGAATGATCATCATCTTTTTCAAC 192133 Query 110274 ATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTA 110333 | || || | |||||| || || | |||||| |||| | || ||| | | || Sbjct 192134 AAATGATGGTAAAGCAATTGAAGCTAAATTGCAAACAGCAACTTCTTCTGGGGAAGAATA 192193 Query 110334 TTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGA 110393 ||| | |||||| ||| || |||||| ||||| | |||||||||||| ||||| || Sbjct 192194 TTCAACAATTTCACAACATAAATTGGAAGATTTAATCATACCCAAGTTCTTTTGATTGGA 192253 Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 ||| || || ||||| ||||| | ||| |||| ||||||||||| || || | | Sbjct 192254 TTTTCTATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGAGCTTC 192313 Query 110454 GAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTC 110513 | ||||| | ||||| | || || ||| || | |||| || || Sbjct 192314 TAAAATGGAATACCATAATTTTTGAGCTTTAACGGTTTGTCTACCACGACCCTCTCTTTC 192373 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 || || || || | ||||||||| | ||||| ||||| | | || || | Sbjct 192374 ATATTTTTCATATAATTGCTCAAATTCATCACCGTAAACATCTGGTAATCCTGGAGCTTC 192433 Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 | ||| |||| | | ||||| || | ||||| ||||||||||| | || || Sbjct 192434 ATTTGGAGAGAATAAAGTCCAATCACCGTTTTGTTCAACTCTCTTCATGAATAAATCTGG 192493 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 |||||| | || | ||| | || | | | ||||| | |||||| || | Sbjct 192494 AATCCATAAAGCTGGGAATAAATCTCTTGCTCTAATTTCTTCTTTACCTTGATTCTTTCT 192553 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA------- 110746 | || | || || | ||||| | ||||||||||| | ||| | ||| | Sbjct 192554 AATATCAATGAAATCAAAAATATCAGCATGCCATGGTTCTAAATAAAGAGCAAAAGCACC 192613 Query 110747 TGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 ||| || ||| || ||| || | |||||| || || || |||||||| | || Sbjct 192614 TGG-TCTCTTGTTACCACCT---TGATCAACATAACGAGCAGTATTGTTGAAGACACGGA 192669 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCA 110865 ||||||||| || || | ||| |||||| ||||| ||| | | || | ||||| Sbjct 192670 CCATAGGAATGATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCACC-AGTGGCA 192728 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TC 110924 ||||||| || ||||| | |||||||||||| || | ||| ||| ||||| || Sbjct 192729 CGAATGTTATGAATATGTAAACCAATACCACCAGCACTCTTTGAGATTAAAGCACAAGTC 192788 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | | | ||| |||||||||||||||| |||||| |||| | |||| || || ||||| Sbjct 192789 TTTAAA-GTATCATAAATACCATCAATAGAATCTTCCTTCATTGCAACTAAGAAACAAGA 192847 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 |||||| || || || || || ||||| || | || || | ||||| | || Sbjct 192848 AGACATTTGTGGGTTTGGAGTACCAGCATTAAATAAAGTTGGAGAACCATGAGTAAAATA 192907 Query 111045 ACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACC 111104 ||||||||| || || | || | | || | ||| | ||| |||||||| Sbjct 192908 TTTTTGGGACATTAAATTATAAGATTCAATAACTCTTGGAATATCATCACCATGAATACC 192967 Query 111105 AATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATCAACACGCT 111163 ||| ||||||| ||||| | || ||| || |||| | | |||| |||| |||||| Sbjct 192968 AATAGCAACTCTCATGATTAAATGTTGTGGTCTTTC-AGCAACTTTACCATTAACACGTA 193026 Query 111164 GAAGGTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 | || |||| || | ||||||| ||| || || | ||| ||||||||||| Sbjct 193027 ATAAATAGGATCTT-TCCAAAGTCTTGAAACCGAAATAATTATAATTAAAATCACGATC 193084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973820788800