Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq46 376 1e-99 seq242 235 3e-57 >seq46 Length=215403 Score = 376 bits (416), Expect = 1e-99 Identities = 1025/1540 (67%), Gaps = 67/1540 (4%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| |||| ||||||||||| | | ||||||||| ||||||||||||||||| Sbjct 191586 AATTCACCAGCTAAAACTCTTCTCGAATAAATGTTTGAAGTATATGGTTCAAAACATTCA 191645 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 ||||| || |||||||| |||||||| || |||||||| || | || || |||||| Sbjct 191646 TTATTACCCAAGATTTGGGAAGTAGAAGCAGTTGGCATAGGAGCAACCAAAAGAGAATTT 191705 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAAC 25195 || ||||||| ||| | || | |||||||||| |||||||||| | | || | Sbjct 191706 CTTAAACCATGTTTGGCCATATTTTGTTTTAATGTATCCCAATCCCA----TAATTCAGT 191761 Query 25196 TCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCT--GCAGGCGA---TT 25250 | | | || ||| |||||||||||||||| ||||| |||| || || || || Sbjct 191762 TGGCTTTC--TATTCCATAAATCAAATTGTAATAATCC--TTGCGAAGCTGGGGAACCTT 191817 Query 25251 GATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAG 25310 | | | ||| ||| ||||| | | || | || | || || | || | Sbjct 191818 GGT---ATGTTTGGTATGCACCTTCTTCTTGAGCTAATTCAATAGAAGTTTCAACAGCTG 191874 Query 25311 CATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAG 25370 ||| ||| || |||||||||| ||||||| |||||| || ||| || | Sbjct 191875 CATGATAAATGGTTTCAAAAATTTGAATGTTTAATTCTCTAGCTTCTTGAGAATCAAATG 191934 Query 25371 CAATTTCCATTAAGGC---GAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGAC 25427 | | ||||||| ||| | ||| ||||| || ||||| ||||| ||| ||| | Sbjct 191935 GTAATC---TTAAGGCCATGAAGGAATCGGCTAAACCTTGAACACCTAAAGCAATTGGTC 191991 Query 25428 GATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACAT 25487 || || | || ||| || ||||| |||||| | || ||| || || | Sbjct 191992 TATTCTTCATGTTGGAAGTCTTAGCTTCTGGAACTGGATAATAGTTACGATCAATGACTT 192051 Query 25488 TATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAG 25547 ||| || ||| | ||| ||||||| || || | || | | | ||| Sbjct 192052 TATTTAAATTACGAGTAACAACCTTTGTGACTTCATGTAATTTTTCGAAATTATACCAAG 192111 Query 25548 GCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAA 25607 | ||| | |||| ||| |||||| | |||||| ||||| |||||||| |||| Sbjct 192112 AATGATCATC---ATCTTTTTCAACAAATGATGGTAAAGCAATTGAAGCTAAATTGCAAA 192168 Query 25608 CAGCTTGTTCTTTCCCGTCAGAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGA 25667 |||| ||||| | |||||||||| || || |||||| ||| |||||| | Sbjct 192169 CAGCAACTTCTTCTGGGGAAGAATATTCAACAATTTCACAACATAAATTGGAAGATTTAA 192228 Query 25668 TTACTCCATAATTCTTTTGATT--ATTGCATGTATTGACAAT-ATCTTTATATCCTAAAT 25724 | | || | ||||||||||| ||| | |||| |||| |||||||||| | | Sbjct 192229 TCATACCCAAGTTCTTTTGATTGGATTT--TCTATT-ACAAGCATCTTTATATAACATAA 192285 Query 25725 ATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTA 25784 |||| || || |||||| |||||| | ||||||| | ||| | || | ||||| | Sbjct 192286 ATGGAGTACCAGTTTCAGTTTGAGCTTCTAAAATGGAATACCATAATTTTTGAGCTTTAA 192345 Query 25785 C--TTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTG 25842 | ||| | ||| | | ||| || |||||| || |||| |||| | Sbjct 192346 CGGTTTGTCTACCACG--ACCCTC---------TCTTTCATATTTTTCATATAATTGCTC 192394 Query 25843 ATTTATTTTCTCAGAGAAAAGTT-TGCCATATTTATTGAGAATAATATTTGGACAGAATA 25901 | | || ||| | ||| | || || | | ||| | || ||||| |||||| Sbjct 192395 A---AATTCATCACCGTAAACATCTGG--TAATCCTGGAGCTTCAT--TTGGAGAGAATA 192447 Query 25902 AATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCAT 25961 || ||||||| | ||||| |||||| ||| ||| ||||||||||||||||| | || Sbjct 192448 AAGTCCAATCACCGTTTTGTTCAACTCTCTTCATGAATAAATCTGGAATCCATAAAGCTG 192507 Query 25962 AAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAAT 26021 ||||||||||| ||||| ||||||||||| || ||||||||| | | ||| | ||||| Sbjct 192508 GGAATAAATCTCTTGCTCTAATTTCTTCTTTACCTTGATTCTTTCTAATATCAATGAAAT 192567 Query 26022 CAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTC 26081 |||||||||| | ||||||||||||||||| | ||||||| |||| ||| || | Sbjct 192568 CAAAAATATCAGCATGCCATGGTTCTAAATAAAGAGCAAAAGCACCTGGTCTCTTGTTAC 192627 Query 26082 CACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAG 26141 |||||||||| || || | ||||| | ||||| || | ||| |||| | || | | Sbjct 192628 CACCTTGATCAACATAACGAGCAGTATTGTTGAAGACACGGACCATAGGAA-TGATACCG 192686 Query 26142 TTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGA 26200 ||| || | || || || | | ||| | | || || | | ||| | ||| ||| Sbjct 192687 TTGGAAGTACCATTAGTACCAGCAATATAAGCACCAGTGGCACGAATGTTATGAATATGT 192746 Query 26201 ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAA-TCTGAAACTGTATCGAAAAT 26259 | ||| || |||||||| | ||||| || |||||| ||| || ||||| |||| Sbjct 192747 AAACCAATACCACCAGCACTCTTTGAGATTAAAGCACAAGTCTTTAA-AGTATCATAAAT 192805 Query 26260 TCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGT 26319 || | || ||| | |||||| | | ||| ||||||||||| | ||| | | | Sbjct 192806 ACCATCAATAGAATCTTCCTTCATTGCAACTAAGAAACAAGAAGACATTTGTGGGTTTGG 192865 Query 26320 TGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT--CAC-TCAAAGC 26376 || || | ||||||||| || || | | |||||||| ||||| || || | ||| Sbjct 192866 AGTACCAGCATTAAATAAAGTTGGAGAACCATGAGTAAAATATTTTTGGGACATTAAA-- 192923 Query 26377 TGTATAAGTTTCAAGAACTTCATCG-ATATTGTAATTACTAACTTCAATAGCTGTTCTTA 26435 |||||| ||||| ||| || | | |||| | | | || ||||||| ||| | Sbjct 192924 -TTATAAGATTCAATAAC-TCTTGGAATATCATCACCATGAATACCAATAGCAACTCTCA 192981 Query 26436 ACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATT 26495 | || ||| |||| |||| || ||| | || |||| ||||| ||| Sbjct 192982 TGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATTAACA--CGTAAT-AAATAGGATC 193038 Query 26496 TTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535 |||| ||||| || || || ||||||| || ||| ||||| Sbjct 193039 TTTCCAAAGTCTTGAAACCGAAATAATTATAATTAAAATC 193078 >seq242 Length=99814 Score = 235 bits (260), Expect = 3e-57 Identities = 1015/1569 (65%), Gaps = 108/1569 (7%) Strand=Plus/Plus Query 25017 ATTCTCCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 |||| |||| || |||| | |||| |||| || ||||| |||||||||||||||| Sbjct 7497 ATTCACCAGCTAATACTCGACGATTAT--ATAAATTGGAAGTATATGGTTCAAAACATTC 7554 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||| || |||||||| || || ||||| |||||||| ||||| ||||| ||||| Sbjct 7555 ATTAAACCCCAAGATTTGTGATGTGGATGCAGTTGGCATGGGTGCTACTAATAATGAATT 7614 Query 25135 TCTCAAACCATA---TTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATC 25191 || | ||| | ||| | | |||||| ||||| ||||||||| || || Sbjct 7615 TCGAAGTCCAAACCGTTTCATATTCTCTT---TTAATGAATCCCAATC------ATCATA 7665 Query 25192 TAACTCGATATCGTTATCAT---ATAAATCAAATTGTAACAATCCACTTGC--TGCAGGC 25246 ||| || | |||| || |||||||| ||||||| | ||| |||| ||| || Sbjct 7666 TAATTCAGAAGGTTTATGATTCCATAAATCATATTGTAAGA-TCC-CTTGGGATGCTGGA 7723 Query 25247 GATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAAC 25306 ||| ||||| | | |||| ||||| ||||| | | ||||| || || Sbjct 7724 GATCCTTCAAATGATTCATATGGACCTTCAACTATTGATAATTGAATTGATGCTTCCAAT 7783 Query 25307 GCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCG 25366 | |||| ||| || ||||||| || ||||||| || |||| | | ||| Sbjct 7784 GATGCATGATAAATGGTTTCAAAGATTTGAATGTTTAAGGTTTTGGCTTCATGTAAATCA 7843 Query 25367 AAAGC-AATTTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGG 25425 || | ||| | || | | ||| |||||||||||| |||||||| | | | | || Sbjct 7844 AATGGTAATCTAAGTTCAAG-GAATAAATCTGCTAATCCTTGAACTCCAATTGCTAAGGG 7902 Query 25426 ACGATGTTTATTATT--ACTTATCT-CAGTTTCTGATGTTGGATAGAAATTTGT---ATC 25479 | |||||| ||||| || | ||| | |||||| ||||||| || || ||| Sbjct 7903 TCTATGTTTTTTATTTGACCTTTCTGCTGTTTCTA---TTGGATAT---TTGGTCACATC 7956 Query 25480 GATCACATTATCTAGATTCTTTATGGCAAG--CTTTG---------TGTATTTTCTCAAC 25528 ||| || |||| | ||| | | | ||| |||| |||| ||| ||| Sbjct 7957 GATAACTTTATTCAAATT---TCTAGTAAGGACTTTAGTTACTGAATGTAATTTTGCAA- 8012 Query 25529 TCAATAAAGTCAAAATAAGGCTT----ATCGTTTATATCTCTTTTTACAAATTTAGATAA 25584 ||| || | || || ||| ||| |||| || |||||| |||| || ||| Sbjct 8013 --AATCAAATTCAAGTACTTCTTCATTATCAATTATTACTGTTTTTAAAAATCGAGGTAA 8070 Query 25585 AGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCT 25643 || | |||| ||| |||||| || ||| | | | | ||||||||| | || | Sbjct 8071 TGCTAATGATCCTAGGTTACAACATGCAGTTTCCT-CAGGAGATGAATATTCAATAATTT 8129 Query 25644 CGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGA 25703 | |||||| || |||||||| ||| |||| ||||||||| || |||| Sbjct 8130 CACAACATAAATTAGATGATTTGATAGTTCCTAAATTTTTTTGATTAGATTTTGAATTGC 8189 Query 25704 CAATATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCT 25763 |||||||||| | ||| ||| |||||||||||||| ||| | ||||| | Sbjct 8190 ATGCATCTTTATATAACATATAGGGCCCACCTGTTTCAATTTGTGATTCCAAAATCGCCA 8249 Query 25764 CCCA-AAGTTCTCTCGCTTTTACTTTCTTTACGAAGTTA--CCATCAGAAACAGCTCTTT 25820 ||| || || | | ||||| || | ||| | || || || || ||||| Sbjct 8250 TCCATAATTTATGT-GCTTTAACAGTAGATACC--GCTAATCCTTCCTTTTCAAATCTTT 8306 Query 25821 CGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGA 25880 |||| | ||| ||||||| | | ||| ||| || || Sbjct 8307 CGTATAATTCTTCAAATTCATCACCATAACAATCACTTAAACCACTGGCA---------- 8356 Query 25881 GAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATA 25940 | ||||||| | ||||| |||||| || || | |||| ||| |||||| | Sbjct 8357 -----ACATTTGGAGAAAATAATGACCAATCTTTATCTTCTTTAACTCTCTTCATAAACA 8411 Query 25941 AATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGAT 26000 |||| || ||||| | | |||||||||||||||| | ||| |||||| || || |||| Sbjct 8412 AATCAGGTATCCATAATCCATAAAATAAATCTCTAGTTCTATGTTCTTCATTCCCATGAT 8471 Query 26001 TCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAA 26060 ||||| | | || || | |||||| |||||| ||||| ||||| | ||| | || | Sbjct 8472 TCTTTCTCATTTCCAAAATATCAAATATATCTCCATGCCAAGGTTCAATATATACCGCGA 8531 Query 26061 AACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTT 26120 | ||| | ||| || || |||||||| || |||||||| || | || || ||| Sbjct 8532 ATGCTCCTGGACGTTTCCCACCTCCTTGATCAACATATCTTGCCGTATTGTTAAATACTC 8591 Query 26121 TCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCG 26180 ||||||||||||| ||||| | ||| || ||||| ||| || ||||| | | Sbjct 8592 TCAACATTGGAACCAATCCGTTAGAAGTCCCATTTGTACTAGCGATAAATGATCCGTTGG 8651 Query 26181 ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240 ||| |||| || |||||| || || || || | |||||| || ||| | Sbjct 8652 ATCGGATATTATGGACATGAACTCCAATCCCTCCTGATGCTTTTGATATCAATGCTGTCT 8711 Query 26241 C-TGAAACTGTATCGA-AAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298 | || || | || | |||| || | ||| ||| | ||||| | | ||||||||| Sbjct 8712 CATGCAA--GGTTCTATAAATCCCATCTATTGAGTCATCCTTCATAGCAAGTAAAAAACA 8769 Query 26299 AGAAGA----TAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAG 26354 ||||| |||| ||| | | |||| | ||| ||||||| |||| ||| ||| Sbjct 8770 TGAAGAAAGGAAATT--GAA--ATTACTTCCGGCATTGTATAATGTTGGTGAAGCGTGAA 8825 Query 26355 TATAATA--TCCTTCAC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAAT 26411 | |||| | | || | ||| | ||| ||||| | ||||||||| | || | | Sbjct 8826 TGAAATATTTATTGGACATTAAATC---ATACGTTTCCATAACTTCATCTAAATCATTAA 8882 Query 26412 TACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTT 26471 | || | | |||||| ||||| | | | |||| || |||| || | || | Sbjct 8883 AATGAATTCCGATAGCTACCCTTAAAAATAAAAATTGGGGAATTTCA---GCAAT-TTCT 8938 Query 26472 CC--GCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATT 26529 || ||| | |||| ||||| || || ||||| ||||||| ||||||| || || ||| Sbjct 8939 CCATTCATTTTTAAT-AAATATGAATTCTCTAATGTTTTCACACCAAAAT-ATGATAATT 8996 Query 26530 -GAAATCTC 26537 ||||||| Sbjct 8997 CAAAATCTC 9005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039087158200