Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq46 376 1e-99
seq242 235 3e-57
>seq46
Length=215403
Score = 376 bits (416), Expect = 1e-99
Identities = 1025/1540 (67%), Gaps = 67/1540 (4%)
Strand=Plus/Plus
Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075
||||| |||| ||||||||||| | | ||||||||| |||||||||||||||||
Sbjct 191586 AATTCACCAGCTAAAACTCTTCTCGAATAAATGTTTGAAGTATATGGTTCAAAACATTCA 191645
Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135
||||| || |||||||| |||||||| || |||||||| || | || || ||||||
Sbjct 191646 TTATTACCCAAGATTTGGGAAGTAGAAGCAGTTGGCATAGGAGCAACCAAAAGAGAATTT 191705
Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAAC 25195
|| ||||||| ||| | || | |||||||||| |||||||||| | | || |
Sbjct 191706 CTTAAACCATGTTTGGCCATATTTTGTTTTAATGTATCCCAATCCCA----TAATTCAGT 191761
Query 25196 TCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCT--GCAGGCGA---TT 25250
| | | || ||| |||||||||||||||| ||||| |||| || || || ||
Sbjct 191762 TGGCTTTC--TATTCCATAAATCAAATTGTAATAATCC--TTGCGAAGCTGGGGAACCTT 191817
Query 25251 GATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAG 25310
| | | ||| ||| ||||| | | || | || | || || | || |
Sbjct 191818 GGT---ATGTTTGGTATGCACCTTCTTCTTGAGCTAATTCAATAGAAGTTTCAACAGCTG 191874
Query 25311 CATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAG 25370
||| ||| || |||||||||| ||||||| |||||| || ||| || |
Sbjct 191875 CATGATAAATGGTTTCAAAAATTTGAATGTTTAATTCTCTAGCTTCTTGAGAATCAAATG 191934
Query 25371 CAATTTCCATTAAGGC---GAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGAC 25427
| | ||||||| ||| | ||| ||||| || ||||| ||||| ||| ||| |
Sbjct 191935 GTAATC---TTAAGGCCATGAAGGAATCGGCTAAACCTTGAACACCTAAAGCAATTGGTC 191991
Query 25428 GATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACAT 25487
|| || | || ||| || ||||| |||||| | || ||| || || |
Sbjct 191992 TATTCTTCATGTTGGAAGTCTTAGCTTCTGGAACTGGATAATAGTTACGATCAATGACTT 192051
Query 25488 TATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAG 25547
||| || ||| | ||| ||||||| || || | || | | | |||
Sbjct 192052 TATTTAAATTACGAGTAACAACCTTTGTGACTTCATGTAATTTTTCGAAATTATACCAAG 192111
Query 25548 GCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAA 25607
| ||| | |||| ||| |||||| | |||||| ||||| |||||||| ||||
Sbjct 192112 AATGATCATC---ATCTTTTTCAACAAATGATGGTAAAGCAATTGAAGCTAAATTGCAAA 192168
Query 25608 CAGCTTGTTCTTTCCCGTCAGAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGA 25667
|||| ||||| | |||||||||| || || |||||| ||| |||||| |
Sbjct 192169 CAGCAACTTCTTCTGGGGAAGAATATTCAACAATTTCACAACATAAATTGGAAGATTTAA 192228
Query 25668 TTACTCCATAATTCTTTTGATT--ATTGCATGTATTGACAAT-ATCTTTATATCCTAAAT 25724
| | || | ||||||||||| ||| | |||| |||| |||||||||| | |
Sbjct 192229 TCATACCCAAGTTCTTTTGATTGGATTT--TCTATT-ACAAGCATCTTTATATAACATAA 192285
Query 25725 ATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTA 25784
|||| || || |||||| |||||| | ||||||| | ||| | || | ||||| |
Sbjct 192286 ATGGAGTACCAGTTTCAGTTTGAGCTTCTAAAATGGAATACCATAATTTTTGAGCTTTAA 192345
Query 25785 C--TTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTG 25842
| ||| | ||| | | ||| || |||||| || |||| |||| |
Sbjct 192346 CGGTTTGTCTACCACG--ACCCTC---------TCTTTCATATTTTTCATATAATTGCTC 192394
Query 25843 ATTTATTTTCTCAGAGAAAAGTT-TGCCATATTTATTGAGAATAATATTTGGACAGAATA 25901
| | || ||| | ||| | || || | | ||| | || ||||| ||||||
Sbjct 192395 A---AATTCATCACCGTAAACATCTGG--TAATCCTGGAGCTTCAT--TTGGAGAGAATA 192447
Query 25902 AATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCAT 25961
|| ||||||| | ||||| |||||| ||| ||| ||||||||||||||||| | ||
Sbjct 192448 AAGTCCAATCACCGTTTTGTTCAACTCTCTTCATGAATAAATCTGGAATCCATAAAGCTG 192507
Query 25962 AAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAAT 26021
||||||||||| ||||| ||||||||||| || ||||||||| | | ||| | |||||
Sbjct 192508 GGAATAAATCTCTTGCTCTAATTTCTTCTTTACCTTGATTCTTTCTAATATCAATGAAAT 192567
Query 26022 CAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTC 26081
|||||||||| | ||||||||||||||||| | ||||||| |||| ||| || |
Sbjct 192568 CAAAAATATCAGCATGCCATGGTTCTAAATAAAGAGCAAAAGCACCTGGTCTCTTGTTAC 192627
Query 26082 CACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAG 26141
|||||||||| || || | ||||| | ||||| || | ||| |||| | || | |
Sbjct 192628 CACCTTGATCAACATAACGAGCAGTATTGTTGAAGACACGGACCATAGGAA-TGATACCG 192686
Query 26142 TTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGA 26200
||| || | || || || | | ||| | | || || | | ||| | ||| |||
Sbjct 192687 TTGGAAGTACCATTAGTACCAGCAATATAAGCACCAGTGGCACGAATGTTATGAATATGT 192746
Query 26201 ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAA-TCTGAAACTGTATCGAAAAT 26259
| ||| || |||||||| | ||||| || |||||| ||| || ||||| ||||
Sbjct 192747 AAACCAATACCACCAGCACTCTTTGAGATTAAAGCACAAGTCTTTAA-AGTATCATAAAT 192805
Query 26260 TCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGT 26319
|| | || ||| | |||||| | | ||| ||||||||||| | ||| | | |
Sbjct 192806 ACCATCAATAGAATCTTCCTTCATTGCAACTAAGAAACAAGAAGACATTTGTGGGTTTGG 192865
Query 26320 TGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT--CAC-TCAAAGC 26376
|| || | ||||||||| || || | | |||||||| ||||| || || | |||
Sbjct 192866 AGTACCAGCATTAAATAAAGTTGGAGAACCATGAGTAAAATATTTTTGGGACATTAAA-- 192923
Query 26377 TGTATAAGTTTCAAGAACTTCATCG-ATATTGTAATTACTAACTTCAATAGCTGTTCTTA 26435
|||||| ||||| ||| || | | |||| | | | || ||||||| ||| |
Sbjct 192924 -TTATAAGATTCAATAAC-TCTTGGAATATCATCACCATGAATACCAATAGCAACTCTCA 192981
Query 26436 ACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATT 26495
| || ||| |||| |||| || ||| | || |||| ||||| |||
Sbjct 192982 TGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATTAACA--CGTAAT-AAATAGGATC 193038
Query 26496 TTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535
|||| ||||| || || || ||||||| || ||| |||||
Sbjct 193039 TTTCCAAAGTCTTGAAACCGAAATAATTATAATTAAAATC 193078
>seq242
Length=99814
Score = 235 bits (260), Expect = 3e-57
Identities = 1015/1569 (65%), Gaps = 108/1569 (7%)
Strand=Plus/Plus
Query 25017 ATTCTCCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074
|||| |||| || |||| | |||| |||| || ||||| ||||||||||||||||
Sbjct 7497 ATTCACCAGCTAATACTCGACGATTAT--ATAAATTGGAAGTATATGGTTCAAAACATTC 7554
Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134
|||| || |||||||| || || ||||| |||||||| ||||| ||||| |||||
Sbjct 7555 ATTAAACCCCAAGATTTGTGATGTGGATGCAGTTGGCATGGGTGCTACTAATAATGAATT 7614
Query 25135 TCTCAAACCATA---TTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATC 25191
|| | ||| | ||| | | |||||| ||||| ||||||||| || ||
Sbjct 7615 TCGAAGTCCAAACCGTTTCATATTCTCTT---TTAATGAATCCCAATC------ATCATA 7665
Query 25192 TAACTCGATATCGTTATCAT---ATAAATCAAATTGTAACAATCCACTTGC--TGCAGGC 25246
||| || | |||| || |||||||| ||||||| | ||| |||| ||| ||
Sbjct 7666 TAATTCAGAAGGTTTATGATTCCATAAATCATATTGTAAGA-TCC-CTTGGGATGCTGGA 7723
Query 25247 GATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAAC 25306
||| ||||| | | |||| ||||| ||||| | | ||||| || ||
Sbjct 7724 GATCCTTCAAATGATTCATATGGACCTTCAACTATTGATAATTGAATTGATGCTTCCAAT 7783
Query 25307 GCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCG 25366
| |||| ||| || ||||||| || ||||||| || |||| | | |||
Sbjct 7784 GATGCATGATAAATGGTTTCAAAGATTTGAATGTTTAAGGTTTTGGCTTCATGTAAATCA 7843
Query 25367 AAAGC-AATTTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGG 25425
|| | ||| | || | | ||| |||||||||||| |||||||| | | | | ||
Sbjct 7844 AATGGTAATCTAAGTTCAAG-GAATAAATCTGCTAATCCTTGAACTCCAATTGCTAAGGG 7902
Query 25426 ACGATGTTTATTATT--ACTTATCT-CAGTTTCTGATGTTGGATAGAAATTTGT---ATC 25479
| |||||| ||||| || | ||| | |||||| ||||||| || || |||
Sbjct 7903 TCTATGTTTTTTATTTGACCTTTCTGCTGTTTCTA---TTGGATAT---TTGGTCACATC 7956
Query 25480 GATCACATTATCTAGATTCTTTATGGCAAG--CTTTG---------TGTATTTTCTCAAC 25528
||| || |||| | ||| | | | ||| |||| |||| ||| |||
Sbjct 7957 GATAACTTTATTCAAATT---TCTAGTAAGGACTTTAGTTACTGAATGTAATTTTGCAA- 8012
Query 25529 TCAATAAAGTCAAAATAAGGCTT----ATCGTTTATATCTCTTTTTACAAATTTAGATAA 25584
||| || | || || ||| ||| |||| || |||||| |||| || |||
Sbjct 8013 --AATCAAATTCAAGTACTTCTTCATTATCAATTATTACTGTTTTTAAAAATCGAGGTAA 8070
Query 25585 AGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCT 25643
|| | |||| ||| |||||| || ||| | | | | ||||||||| | || |
Sbjct 8071 TGCTAATGATCCTAGGTTACAACATGCAGTTTCCT-CAGGAGATGAATATTCAATAATTT 8129
Query 25644 CGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGA 25703
| |||||| || |||||||| ||| |||| ||||||||| || ||||
Sbjct 8130 CACAACATAAATTAGATGATTTGATAGTTCCTAAATTTTTTTGATTAGATTTTGAATTGC 8189
Query 25704 CAATATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCT 25763
|||||||||| | ||| ||| |||||||||||||| ||| | ||||| |
Sbjct 8190 ATGCATCTTTATATAACATATAGGGCCCACCTGTTTCAATTTGTGATTCCAAAATCGCCA 8249
Query 25764 CCCA-AAGTTCTCTCGCTTTTACTTTCTTTACGAAGTTA--CCATCAGAAACAGCTCTTT 25820
||| || || | | ||||| || | ||| | || || || || |||||
Sbjct 8250 TCCATAATTTATGT-GCTTTAACAGTAGATACC--GCTAATCCTTCCTTTTCAAATCTTT 8306
Query 25821 CGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGA 25880
|||| | ||| ||||||| | | ||| ||| || ||
Sbjct 8307 CGTATAATTCTTCAAATTCATCACCATAACAATCACTTAAACCACTGGCA---------- 8356
Query 25881 GAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATA 25940
| ||||||| | ||||| |||||| || || | |||| ||| |||||| |
Sbjct 8357 -----ACATTTGGAGAAAATAATGACCAATCTTTATCTTCTTTAACTCTCTTCATAAACA 8411
Query 25941 AATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGAT 26000
|||| || ||||| | | |||||||||||||||| | ||| |||||| || || ||||
Sbjct 8412 AATCAGGTATCCATAATCCATAAAATAAATCTCTAGTTCTATGTTCTTCATTCCCATGAT 8471
Query 26001 TCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAA 26060
||||| | | || || | |||||| |||||| ||||| ||||| | ||| | || |
Sbjct 8472 TCTTTCTCATTTCCAAAATATCAAATATATCTCCATGCCAAGGTTCAATATATACCGCGA 8531
Query 26061 AACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTT 26120
| ||| | ||| || || |||||||| || |||||||| || | || || |||
Sbjct 8532 ATGCTCCTGGACGTTTCCCACCTCCTTGATCAACATATCTTGCCGTATTGTTAAATACTC 8591
Query 26121 TCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCG 26180
||||||||||||| ||||| | ||| || ||||| ||| || ||||| | |
Sbjct 8592 TCAACATTGGAACCAATCCGTTAGAAGTCCCATTTGTACTAGCGATAAATGATCCGTTGG 8651
Query 26181 ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240
||| |||| || |||||| || || || || | |||||| || ||| |
Sbjct 8652 ATCGGATATTATGGACATGAACTCCAATCCCTCCTGATGCTTTTGATATCAATGCTGTCT 8711
Query 26241 C-TGAAACTGTATCGA-AAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298
| || || | || | |||| || | ||| ||| | ||||| | | |||||||||
Sbjct 8712 CATGCAA--GGTTCTATAAATCCCATCTATTGAGTCATCCTTCATAGCAAGTAAAAAACA 8769
Query 26299 AGAAGA----TAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAG 26354
||||| |||| ||| | | |||| | ||| ||||||| |||| ||| |||
Sbjct 8770 TGAAGAAAGGAAATT--GAA--ATTACTTCCGGCATTGTATAATGTTGGTGAAGCGTGAA 8825
Query 26355 TATAATA--TCCTTCAC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAAT 26411
| |||| | | || | ||| | ||| ||||| | ||||||||| | || | |
Sbjct 8826 TGAAATATTTATTGGACATTAAATC---ATACGTTTCCATAACTTCATCTAAATCATTAA 8882
Query 26412 TACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTT 26471
| || | | |||||| ||||| | | | |||| || |||| || | || |
Sbjct 8883 AATGAATTCCGATAGCTACCCTTAAAAATAAAAATTGGGGAATTTCA---GCAAT-TTCT 8938
Query 26472 CC--GCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATT 26529
|| ||| | |||| ||||| || || ||||| ||||||| ||||||| || || |||
Sbjct 8939 CCATTCATTTTTAAT-AAATATGAATTCTCTAATGTTTTCACACCAAAAT-ATGATAATT 8996
Query 26530 -GAAATCTC 26537
|||||||
Sbjct 8997 CAAAATCTC 9005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039087158200
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