Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq46 224 1e-53 seq217 111 2e-19 >seq46 Length=215403 Score = 224 bits (248), Expect = 1e-53 Identities = 834/1297 (64%), Gaps = 29/1297 (2%) Strand=Plus/Minus Query 75320 CCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379 ||||| | || ||||||||||| |||| || || ||||| ||| ||| | | || Sbjct 192889 CCAACTTTATTTAATGCTGGTACTCCAAACCCACAAATGTCTTCTTGTTTCTTAGTTGCA 192830 Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439 | ||||| || || || | ||||| |||| ||| | | | ||||| ||||||| Sbjct 192829 ATGAAGGAAGATTCTATTGATGGTATTTATGATACTTTAAAGACTTGTGCTTTAATCTCA 192770 Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499 ||| | ||||| |||||||| | || || ||| | | | |||| | || |||| Sbjct 192769 AAGAGTGCTGGTGGTATTGGTTTACATATTCATAACATTCGTGCCACTGGTGCTTATATT 192710 Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 || || |||||| || | ||||| ||||| ||| | || || || ||| || Sbjct 192709 GCTGGTACTAATGGTACTTCCAACGGTATCATTCCTATGGTCCGTGTCTTCAACAATACT 192650 Query 75560 GCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTG 75613 || || ||||| |||||| || | |||| | || | | || | || || Sbjct 192649 GCTCGTTATGTTGATCAAGGTGG---TAACAAGAGACCAGGTGCTTTTGCTCTTTATTTA 192593 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673 |||||||||||||| ||||| | || ||| |||| | || || |||||| | ||| Sbjct 192592 GAACCATGGCATGCTGATATTTTTGATTTCATTGATATTAGAAAGAATCAAGGTAAAGAA 192533 Query 75674 GAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 || | | |||||| | || || | | ||||||||||| | ||||||||| | Sbjct 192532 GAAATTAGAGCAAGAGATTTATTCCCAGCTTTATGGATTCCAGATTTATTCATGAAGAGA 192473 Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793 ||||| | ||| | ||| || | |||| |||| | | || ||||| | | || Sbjct 192472 GTTGAACAAAACGGTGATTGGACTTTATTCTCTCCAAATGAAGCTCCAGGATTACCAGAT 192413 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG----AGC 75849 | ||||| || ||||| | || ||| |||||| |||||| | || Sbjct 192412 GTTTACGGTGATGAATTTGAGCAATTATATGAAAAATATGAAAGAGAGGGTCGTGGTAGA 192353 Query 75850 CAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 ||| || || ||| | | ||| | | ||| | || | || || || || Sbjct 192352 CAA----ACCGTTAAAGCTCAAAAATTATGGTATTCCATTTTAGAAGCTCAAACTGAAAC 192297 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 ||| || |||| |||| | || || ||||||||||| | || || |||||||| || Sbjct 192296 TGGTACTCCATTTATGTTATATAAAGATGCTTGTAATAGAAAATCCAATCAAAAGAACTT 192237 Query 75970 GGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGA 76029 ||| | || || || ||| | || |||||| | || || | || || Sbjct 192236 GGGTATGATTAAATCTTCCAATTTATGTTGTGAAATTGTTGAATATTCTTCCCCAGAAGA 192177 Query 76030 GACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA-GACTC 76088 |||||||||||||| || ||||| || | ||| | ||| | |||| || Sbjct 192176 AGTTGCTGTTTGCAATTTAGCTTCAATTGCTTTACCATCATTTGTTGAAAAAGATGATGA 192117 Query 76089 GCACTTTTG-----ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 || | ||| ||| |||||| | |||||| |||||||| ||||||| ||| | Sbjct 192116 TCATTCTTGGTATAATTTCGAAAAATTACATGAAGTCACAAAGGTTGTTACTCGTAATTT 192057 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGC 76202 ||| ||||||||| | || | |||||| ||| ||| || | || || ||| Sbjct 192056 AAATAAAGTCATTGATCGTAACTATTATCCAGTTCCAGAA-GCTAAGACTTCCAACATGA 191998 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 | ||||| |||| ||| |||||||||||| | || ||| || || | | | Sbjct 191997 AGAATAGACCAATTGCTTTAGGTGTTCAAGGTTTAGCCGATTCCTTCATGGCCTTAAGAT 191938 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 |||||||||| | ||||| | || | || || || ||||||||||| |||| Sbjct 191937 TACCATTTGATTCTCAAGAAGCTAGAGAATTAAACATTCAAATTTTTGAAACCATTTATC 191878 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | ||| | | || | | |||||| ||| ||| ||||| | || | |||| Sbjct 191877 ATGCAGCTGTTGAAACTTCTATTGAATTAGCTCAAGAAGAAGGTGCATACCAAACATACC 191818 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 | ||||| || || || ||||| | | || |||||| | ||| | | || |||| | Sbjct 191817 AAGGTTCCCCAGCTTCGCAAGGATTATTACAATTTGATTTATGGAATAGA-AAGCCAA-C 191760 Query 76443 TCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 | || || | | |||||| | || || || | | ||| | | || Sbjct 191759 TGAATTATGGGATTGGGATACATTAAAACAAAATATGGCCAAACATGGTTTAAGAAATTC 191700 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 ||||||| | || || |||||||| || || || | ||||||||||||||||||||||| Sbjct 191699 TCTTTTGGTTGCTCCTATGCCAACTGCTTCTACTTCCCAAATCTTGGGTAATAATGAATG 191640 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 ||||||||||| || ||||||| || ||||||| Sbjct 191639 TTTTGAACCATATACTTCAAACATTTATTCGAGAAGA 191603 >seq217 Length=263222 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27873 TTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAAC 27932 |||||| || | ||| || ||| || ||||| || || ||| ||||| || | ||| Sbjct 144402 TTGTGCAATTCTATCACCAGCCTTAACTTCAAAATCCTTATCTGAATGATTAAATAAAAC 144343 Query 27933 GACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCATG 27992 || || ||||||||| |||| || | |||||||||||| |||||| ||||||||| Sbjct 144342 AACCTTAACTTCACCTCTATAATCAGCATCAATAACACCAGCACCAGTAGAAATACCATG 144283 Query 27993 CTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 ||| ||||| | || || || || |||||||||||||| Sbjct 144282 CTTAACAGCTAATCCAGAACGAGGAGCAACACGACCATA 144244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567392692480