Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq253 174 3e-38 seq254 165 1e-35 >seq253 Length=293773 Score = 174 bits (192), Expect = 3e-38 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | |||| ||| || |||| || || || || Sbjct 106523 ATTTGCATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTG 106582 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| |||||| ||| ||||||||||| || || || ||||| | |||||| Sbjct 106583 TAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGA 106642 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| |||||||| ||||| | ||| | || ||| || || ||| Sbjct 106643 TCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAA 106702 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || |||||||||| || ||||| ||||| |||| ||||| || || ||||||||| || Sbjct 106703 GATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATTGTA 106762 Query 193365 T 193365 | Sbjct 106763 T 106763 Score = 168 bits (186), Expect = 1e-36 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | |||| ||| || |||| || || || || Sbjct 106295 ATTTGCATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTG 106354 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| |||||| ||| ||||||||||| || || || ||||| | |||||| Sbjct 106355 TAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGA 106414 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| |||||||| ||||| | ||| | || |||||| || ||| Sbjct 106415 TCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAA 106474 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||||| ||| || || ||||| |||| || || || || |||||||| Sbjct 106475 GATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| |||| | || | |||||||||| || || || || ||||| || Sbjct 106075 ACCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGA 106134 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| |||||| ||| ||||||||||| || || || ||||| | ||||| ||||| || Sbjct 106135 TAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGG 106194 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| |||||||| ||||| | ||| | || |||||| || ||||| ||||| Sbjct 106195 AATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106254 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||| || || ||||| |||| || || || || |||||||| Sbjct 106255 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 >seq254 Length=76587 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| |||| | |||| || || |||| || || || || ||||| || Sbjct 42913 ACCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 42972 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| |||||| ||| |||||||| || || ||||| |||||||| ||||||||||| || Sbjct 42973 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 43032 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| |||||||| || |||| ||| | ||| ||| || |||||||| || || Sbjct 43033 AATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGAC 43092 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || ||||| |||| || || || || ||||||||||| Sbjct 43093 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899651071278720