Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq46 320 2e-82 seq253 143 4e-29 seq254 141 1e-28 >seq46 Length=215403 Score = 320 bits (354), Expect = 2e-82 Identities = 578/831 (70%), Gaps = 20/831 (2%) Strand=Plus/Plus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | || |||||||| || ||||| || | ||||| || | ||| ||||||||| Sbjct 149154 ACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTTTCCATGAAATCAAAT 149213 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA-TAATAATCTATCTGCTAC 17997 ||||||||| || ||| || | | || || | || |||||||||||| || || Sbjct 149214 GGATTAGTGACATTGTAAACCTTCTTAT-TACCAAATGCTACTAATAATCTATCAGCAAC 149272 Query 17998 AAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGC 18057 |||||| || ||||| |||| || | || |||||||||| | || | ||||| || Sbjct 149273 AAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAACAAACTAACAGGTAAGGC 149332 Query 18058 ATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGA 18117 |||| | | ||||| || || || |||||| ||| || || ||| | || | Sbjct 149333 ATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATAATCTTTTCAA---TA-A 149388 Query 18118 TTTTGGCAATTTATTAATTATGTGATTATAATA-TAATAAACACGCAAAATCAGTGTGTA 18176 ||| ||| | | ||| | | | | | ||||||||| ||||||||||| |||| Sbjct 149389 TTTCTGCAGCTGGTCTATTTTCCAAATGGGAGAATAATAAACAAGCAAAATCAGTATGTA 149448 Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236 ||||||||||||| | ||||||||||| || ||||| || ||||||| |||||| | Sbjct 149449 AACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCAGGCATTAAACCTCTCT 149508 Query 18237 tttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACGCG 18295 | |||| |||||| || |||||||| || | ||||| ||||| ||||| ||| ||| Sbjct 149509 TCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATACCTTCAACAGCA-GCG 149567 Query 18296 AACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCCA 18354 || || | ||||||||||||||| | || || | || || |||||| | | ||||| Sbjct 149568 AATGCAACTAATCTTTCAGCAAATAAGGCTTCATCG-TCTGTGATCCATCTAAGAGCCCA 149626 Query 18355 TTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTC 18414 || | | ||||| || ||| || |||||||| ||||||| || ||| Sbjct 149627 GTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAACAAATAGTCGGCTTC 149686 Query 18415 TTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTC 18474 || | ||| || ||||||||||||||||| | ||||| |||||||||| ||| |||| Sbjct 149687 CTTTGGATCCTTGATATAAGTGTCGATTAAAAGGGAATAAGTTTCAGAATGAATGTTTTC 149746 Query 18475 CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC-GCTATAAA 18533 ||| || || |||| ||| || || | || || ||| ||||| || ||| | | Sbjct 149747 CATCATGATTTGGAAACCATAGAAGGACTTGGCTTCTGGAATTTGAACTTCAGCT-GAGA 149805 Query 18534 ATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA--- 18590 | |||| |||||||| |||||||| ||||| || | || || || || || | | Sbjct 149806 AGTTTTCAACCAAATTTTCATTAACGATACCATCTGAAGCAGCAAAGAACGCAAGGATTC 149865 Query 18591 CATATTTAATGAAATGTTTTTCATTATCCTTGA--GATTGTTCCATTCATCTATATCTTT 18648 | | | | |||| ||| || | || || | ||| |||| || | || |||||| Sbjct 149866 TAGAAATGAAGAAACGTTCGTCGTCAT--TTAATTTATTTCTCCAATCGTTTAAATCTTT 149923 Query 18649 TGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 || ||| | |||||| | ||||| ||||| | ||| |||| |||||| Sbjct 149924 ACTTAAATCGATTTCTTCGGCAGTCCAGAAAGAAGCTTCAGCCTTTTTGTA 149974 >seq253 Length=293773 Score = 143 bits (158), Expect = 4e-29 Identities = 174/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 155818 ATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAG 155877 ||| ||||||||| || ||||||| || || || || |||||||| |||||||| ||| Sbjct 106763 ATACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAAT 106704 Query 155878 ATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAG 155937 |||||| | ||| ||||| ||| |||||| |||||||| ||||| || || || | Sbjct 106703 CTTCTGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTG 106644 Query 155938 AACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATT 155997 | |||||| | || || | || ||||| || | |||||| ||||||||||| || | Sbjct 106643 ATCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACT 106584 Query 155998 ATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | | | ||||||| || | || | ||||| || |||||||| ||||| ||| Sbjct 106583 ACA--ACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGGT 106531 Score = 140 bits (154), Expect = 5e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || || ||||| || || ||||| |||||||| ||| |||| Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| |||||| |||||||| ||||| || || || || ||| Sbjct 106242 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATTCCACCTGACCAA 106183 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | || ||||| || | |||||| ||||||||||| || || || Sbjct 106182 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106123 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| || | || | || ||||| || ||||||||||| ||| Sbjct 106122 AT--CCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGGT 106075 Score = 140 bits (154), Expect = 5e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || || ||||| || || ||||| |||||||| ||| |||| Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| |||||| |||||||| ||||| || || || || ||| Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | || ||||| || | |||||| ||||||||||| || || | Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA-- 106353 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || | ||||| || |||||||| ||||| ||| Sbjct 106352 ACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGGT 106303 >seq254 Length=76587 Score = 141 bits (156), Expect = 1e-28 Identities = 173/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || ||||| || || ||||| |||||||||||| | Sbjct 43143 AAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCT 43084 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || ||| || || |||||||| ||||| || || || || Sbjct 43083 TCCGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGAT 43024 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | ||| |||||||| | |||||| ||||||||||| || || Sbjct 43023 CAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTAC 42964 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| || | || | || || || |||||||||||||| |||| Sbjct 42963 AACAT--CCAAAAGGAATCTACTTTACACTTGGTCTTAAGATTAAGAGGTGGTG 42912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869292073600