Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq253 194 3e-44 seq46 194 3e-44 seq254 178 3e-39 >seq253 Length=293773 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || ||||||||||||| || || ||| || || ||| Sbjct 106301 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106360 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| |||| || |||||||||||||| |||||||| | |||||||||||| Sbjct 106361 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106420 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| |||||| ||| || ||| |||| || || ||||| Sbjct 106421 GGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCA 106480 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||||||| ||||||||||| || |||| || || ||||| Sbjct 106481 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 185 bits (204), Expect = 2e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || ||||||||||||| || || ||| || || ||| Sbjct 106529 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106588 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| |||| || |||||||||||||| |||||||| | |||||||||||| Sbjct 106589 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106648 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| |||||| ||| || ||| || | || || ||||| Sbjct 106649 GGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCA 106708 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT 192541 ||||||| ||||| || ||||| ||||| ||||||| || || |||||| ||| Sbjct 106709 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATTGTAT 106763 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || ||||| || || |||| || || ||| || || ||||| Sbjct 106075 ACCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGA 106134 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| |||| || |||||||||||||| |||||||| | ||||| |||||||| Sbjct 106135 TAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGG 106194 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| |||||| ||| || ||| |||| || || ||||| || Sbjct 106195 AATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106254 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||| ||||||||||| || |||| || || ||||| Sbjct 106255 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 >seq46 Length=215403 Score = 194 bits (214), Expect = 3e-44 Identities = 451/680 (66%), Gaps = 11/680 (2%) Strand=Plus/Plus Query 49576 CTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTA 49635 ||||||| || | ||| |||||||||||||| || ||| ||| || | | || Sbjct 149185 CTAATGAAATGTTTTCCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCT-TATTA 149243 Query 49636 TCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAA 49694 ||| || |||||||||||| || ||||||||||| ||||| ||||||| | ||| Sbjct 149244 CCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAG 149303 Query 49695 TTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctaca 49754 |||||||| || || ||| ||||| |||||| | ||||| ||||| || | ||| Sbjct 149304 TTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACA 149363 Query 49755 gcttgtttaattatcataattatattattttttga--taatttatatttaatatgattcg 49812 || | ||| ||| | || || |||| | | | | ||| || | ||| | Sbjct 149364 GCCTCAACAATAATCTT--TTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGG---G 149418 Query 49813 catatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTAC 49872 ||| |||||| |||||||||||||||||||| || || ||| | || ||||| || Sbjct 149419 AGAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGG 149478 Query 49873 TAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTAC 49932 || ||||| || |||||||| |||||||| || | |||||| || ||||| || || Sbjct 149479 AGAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAAC 149538 Query 49933 TAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT 49992 | ||||| ||||| || ||| || ||||| | || |||| | |||| | || Sbjct 149539 CACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTT 149598 Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 ||| ||| ||||| | | |||||| || || || ||| | ||| | || |||| | Sbjct 149599 CATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGT 149658 Query 50053 CTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112 | ||||| || || || | | ||| | ||||| | Sbjct 149659 CAATAGCATTGAACAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAA 149718 Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT- 50171 ||||| |||||||||| | |||||| ||||| || ||| || | ||| Sbjct 149719 GGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAA-GGACTTG 149777 Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 ||||||| | |||||||| | |||| |||||| ||||| ||| || |||||| Sbjct 149778 GCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCA 149837 Query 50232 TCAGATGCTGCGAAGAATGC 50251 || || || || ||||| || Sbjct 149838 TCTGAAGCAGCAAAGAACGC 149857 >seq254 Length=76587 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| || || |||||||||| || || ||| || || ||||| Sbjct 42913 ACCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 42972 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| |||| || ||||| |||||||||||||||||||| |||||||||||||| Sbjct 42973 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 43032 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || ||| ||||| || | || || ||||| || Sbjct 43033 AATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGAC 43092 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| |||||||| ||||||||||| || || | || || |||||||| Sbjct 43093 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476266359600