Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq253 194 3e-44
seq46 194 3e-44
seq254 178 3e-39
>seq253
Length=293773
Score = 194 bits (214), Expect = 3e-44
Identities = 181/230 (79%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | | ||| || ||||||||||||| || || ||| || || |||
Sbjct 106301 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106360
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| |||| |||| || |||||||||||||| |||||||| | ||||||||||||
Sbjct 106361 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106420
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| |||||| ||| || ||| |||| || || |||||
Sbjct 106421 GGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCA 106480
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| ||||||||| ||||||||||| || |||| || || |||||
Sbjct 106481 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530
Score = 185 bits (204), Expect = 2e-41
Identities = 182/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | | ||| || ||||||||||||| || || ||| || || |||
Sbjct 106529 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106588
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| |||| |||| || |||||||||||||| |||||||| | ||||||||||||
Sbjct 106589 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106648
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| |||||| ||| || ||| || | || || |||||
Sbjct 106649 GGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCA 106708
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT 192541
||||||| ||||| || ||||| ||||| ||||||| || || |||||| |||
Sbjct 106709 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATTGTAT 106763
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | || ||||| || || |||| || || ||| || || |||||
Sbjct 106075 ACCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGA 106134
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| |||| |||| || |||||||||||||| |||||||| | ||||| ||||||||
Sbjct 106135 TAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGG 106194
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| |||||||| |||||| ||| || ||| |||| || || ||||| ||
Sbjct 106195 AATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106254
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||||||| ||||||||||| || |||| || || |||||
Sbjct 106255 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302
>seq46
Length=215403
Score = 194 bits (214), Expect = 3e-44
Identities = 451/680 (66%), Gaps = 11/680 (2%)
Strand=Plus/Plus
Query 49576 CTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTA 49635
||||||| || | ||| |||||||||||||| || ||| ||| || | | ||
Sbjct 149185 CTAATGAAATGTTTTCCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCT-TATTA 149243
Query 49636 TCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAA 49694
||| || |||||||||||| || ||||||||||| ||||| ||||||| | |||
Sbjct 149244 CCAAATGCTACTAATAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAG 149303
Query 49695 TTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctaca 49754
|||||||| || || ||| ||||| |||||| | ||||| ||||| || | |||
Sbjct 149304 TTCATACCTAACAAACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACA 149363
Query 49755 gcttgtttaattatcataattatattattttttga--taatttatatttaatatgattcg 49812
|| | ||| ||| | || || |||| | | | | ||| || | ||| |
Sbjct 149364 GCCTCAACAATAATCTT--TTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATGG---G 149418
Query 49813 catatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTAC 49872
||| |||||| |||||||||||||||||||| || || ||| | || ||||| ||
Sbjct 149419 AGAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGG 149478
Query 49873 TAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTAC 49932
|| ||||| || |||||||| |||||||| || | |||||| || ||||| || ||
Sbjct 149479 AGAATGTTAAACCAGGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAAC 149538
Query 49933 TAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT 49992
| ||||| ||||| || ||| || ||||| | || |||| | |||| | ||
Sbjct 149539 CACTGAAGAAAATACCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTT 149598
Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052
||| ||| ||||| | | |||||| || || || ||| | ||| | || |||| |
Sbjct 149599 CATCGTCTGTGATCCATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGT 149658
Query 50053 CTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112
| ||||| || || || | | ||| | ||||| |
Sbjct 149659 CAATAGCATTGAACAAATAGTCGGCTTCCTTTGGATCCTTGATATAAGTGTCGATTAAAA 149718
Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT- 50171
||||| |||||||||| | |||||| ||||| || ||| || | |||
Sbjct 149719 GGGAATAAGTTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAA-GGACTTG 149777
Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231
||||||| | |||||||| | |||| |||||| ||||| ||| || ||||||
Sbjct 149778 GCTTCTGGAATTTGAACTTCAGCTGAGAAGTTTTCAACCAAATTTTCATTAACGATACCA 149837
Query 50232 TCAGATGCTGCGAAGAATGC 50251
|| || || || ||||| ||
Sbjct 149838 TCTGAAGCAGCAAAGAACGC 149857
>seq254
Length=76587
Score = 178 bits (196), Expect = 3e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | ||| || || |||||||||| || || ||| || || |||||
Sbjct 42913 ACCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 42972
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| |||| |||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 42973 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 43032
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| |||||||| || || ||| ||||| || | || || ||||| ||
Sbjct 43033 AATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGAC 43092
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
||||| |||||||| ||||||||||| || || | || || ||||||||
Sbjct 43093 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984476266359600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |