Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq46 224 2e-53 seq253 185 2e-41 seq254 170 3e-37 >seq46 Length=215403 Score = 224 bits (248), Expect = 2e-53 Identities = 378/542 (70%), Gaps = 9/542 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || ||||||||| | |||||||| ||||| || || || ||||||| || Sbjct 149139 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTT 149198 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAA 38950 | ||| |||||||||||||| || ||| ||| || | | || ||| || ||| Sbjct 149199 TCCATGAAATCAAATGGATTAGTGACATTGTAAACCTTCT-TATTACCAAATGCTACTAA 149257 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || ||||||||||| ||||| ||||||| | ||| |||||||| || || Sbjct 149258 TAATCTATCAGCAACAAATTCAACGTATTGACACATTAACTTACAGTTCATACCTAACAA 149317 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 ||| ||||| |||||| | ||||| ||||| || | ||||| | ||| || Sbjct 149318 ACTAACAGGTAAGGCATCAGTGAAGAATTCCTTTTCAATAGCAACAGCCTCAACAATAAT 149377 Query 39071 cataattatattattttt--tgataatttatatttaatatgattcgcatataGTAAACAT 39128 | | || || |||| | | | | ||| || | ||| | ||| |||||| Sbjct 149378 CTT--TTCAATAATTTCTGCAGCTGGTCTATTTTCCAAATG---GGAGAATAATAAACAA 149432 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| |||||||||||||| || ||| | || ||||| || || ||||| || Sbjct 149433 GCAAAATCAGTATGTAAACCTTCATCTCTACAGATTAATTCGTTGGAGAATGTTAAACCA 149492 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 |||||||| |||||||| || | |||||| || ||||| || || | ||||| ||| Sbjct 149493 GGCATTAAACCTCTCTTCTTTAACCAAAAGATGGATGCGAATGAACCACTGAAGAAAATA 149552 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 || || ||| || ||||| | || |||| | |||| | || ||| ||| ||| Sbjct 149553 CCTTCAACAGCAGCGAATGCAACTAATCTTTCAGCAAATAAGGCTTCATCGTCTGTGATC 149612 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || | | ||||| || || || ||| | ||| | || |||| || ||||| || || Sbjct 149613 CATCTAAGAGCCCAGTCAGCCTTCTTTCTAATACATGGAATATGGTCAATAGCATTGAAC 149672 Query 39369 AA 39370 || Sbjct 149673 AA 149674 >seq253 Length=293773 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || ||||||||||||| || || || || || || Sbjct 106301 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106360 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || || |||||||||||||| || ||||| | ||||| |||||| Sbjct 106361 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106420 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| ||| || ||| ||||| || || ||||| Sbjct 106421 GGGATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCA 106480 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||||||| ||||||||||| || |||| ||| || ||||| Sbjct 106481 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 176 bits (194), Expect = 8e-39 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || ||||||||||||| || || || || || || Sbjct 106529 ATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 106588 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || || |||||||||||||| || ||||| | ||||| |||||| Sbjct 106589 GATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGT 106648 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| ||| || ||| || || || || ||||| Sbjct 106649 GGGATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCA 106708 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTAT 172074 ||||||| ||||| || ||||| ||||| ||||||| ||| || |||||| ||| Sbjct 106709 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATTGTAT 106763 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || ||||| || || |||| || || || || || || || Sbjct 106075 ACCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGA 106134 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || |||||||||||||| || ||||| | |||||||||||||| Sbjct 106135 TAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGG 106194 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| |||||||| |||||| ||| || ||| ||||| || || ||||| || Sbjct 106195 AATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106254 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||| ||||||||||| || |||| ||| || ||||| Sbjct 106255 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 >seq254 Length=76587 Score = 170 bits (188), Expect = 3e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || ||| || || |||||||||| || || || || Sbjct 42905 TTCTTACCACCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTG 42964 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||||| || | || || ||||| ||||||||||| |||||||| ||||| Sbjct 42965 TAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGA 43024 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| |||||||| || || ||| ||||| || || || || Sbjct 43025 TCAGGTGGAATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAA 43084 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||||| |||||||| ||||||||||| || || | ||| || |||||||| Sbjct 43085 GATTCGACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905132650996800