Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq46 199 1e-45
seq220 98.7 3e-15
seq190 98.7 3e-15
seq217 86.0 2e-11
>seq46
Length=215403
Score = 199 bits (220), Expect = 1e-45
Identities = 379/555 (68%), Gaps = 5/555 (1%)
Strand=Plus/Plus
Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038
|| |||||||| | | || | ||| || |||||||| ||| ||| || | |||
Sbjct 192540 CCTTGATTCTTTCTAATATCAATGAAATCAAAAATATCAGCATGCCATGGTTCTAAATAA 192599
Query 156039 ATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTG 156095
| ||||||| ||| |||||| ||||| ||||| ||||| |||||||| || |||
Sbjct 192600 AGAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACGAGCAGTATTGTTG 192659
Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155
||||||| | ||||||||| ||||| |||||||| ||||| || || ||||| | |
Sbjct 192660 AAGACACGGACCATAGGAATGATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCA 192719
Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215
|||| | |||| ||||||||||||| ||||||||||| | | || || ||| |
Sbjct 192720 CCAGTGGCACGAATGTTATGAATATGTAAACCAATACCACCAGCACTCTTTGAGATTAAA 192779
Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275
|| || ||||| ||||| ||||||| ||||||||||| || | ||||| | ||
Sbjct 192780 GCACAAGTCTTTAAAGTATCATAAATACCATCAATAGAATCTTCCTTCATTGCAACTAAG 192839
Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335
| || ||| | ||| || ||| || ||||| || |||| || || | |||||
Sbjct 192840 AAACAAGAAGACATTTGTGGGTTTGGAGTACCAGCATTAAATAAAGTTGGAGAACCATGA 192899
Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAA-TCTTCTCAAGATTAGACCC 156394
||||||| || | ||||| ||| || | || ||| |||| || || | ||
Sbjct 192900 GTAAAATATTTTTGGGACATTAAATTATAAGATTCAATAACTCTT-GGAATATCATCACC 192958
Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454
||||||| |||| || ||||| | ||| || || | || ||| ||||
Sbjct 192959 ATGAATACCAATAGCAACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATT 193018
Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514
|| || | | || | | ||||| ||| || || |||||||||| | | ||||||
Sbjct 193019 AACACGTAATAAATAGGATCTTTCCAAAGTCTTGAAACCGAAATAATTATAATTAAAATC 193078
Query 156515 ACGGTTGTAATCAAT 156529
||| | ||| ||||
Sbjct 193079 ACGATCATAAACAAT 193093
Score = 131 bits (144), Expect = 5e-25
Identities = 267/393 (68%), Gaps = 14/393 (4%)
Strand=Plus/Minus
Query 133214 TTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTA 133273
|| ||||||| || | ||||| |||||||| |||||||| ||| |||||||||
Sbjct 149875 TTCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTG 149816
Query 133274 G--GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTAC 133331
| ||| || | | | ||||||||| | | |||||| |||| ||||| | |
Sbjct 149815 GTTGAAAACTTCTCA--GCTGAAGTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCC 149758
Query 133332 AGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCA 133391
| || ||||||||| || |||||| || ||||| | |||| || ||||| ||||
Sbjct 149757 AAATCATGATGGAAAACATTCATTCTGAAACTTATTCCCTTTTAATCGACACTTATATCA 149698
Query 133392 AAGATACCGTCCA---GAAGC--ACAAACTATTCAACGCCATTAGCGAATTTCCTTGTAT 133446
| ||| ||| ||||| || | | ||||| || ||| | | |||| |||||
Sbjct 149697 AGGAT-----CCAAAGGAAGCCGACTATTTGTTCAATGCTATTGACCATATTCCATGTAT 149643
Query 133447 TAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTAC 133506
|| |||||| ||||||||||| ||| ||||||| ||| | || ||||||
Sbjct 149642 TAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCTGA 149583
Query 133507 TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTAT 133566
| | ||||| || |||| || || || ||||| ||||||||| | ||| || ||
Sbjct 149582 AAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCAT 149523
Query 133567 TTTTTGGCTTAAAAAGCGTGGTATTCTACCTGG 133599
|||||| | || ||| | ||| | | |||||
Sbjct 149522 CTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGG 149490
Score = 113 bits (124), Expect = 1e-19
Identities = 349/532 (66%), Gaps = 21/532 (4%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|||||||| ||||| | | |||||||| || || ||||| || || || || ||
Sbjct 30009 CTATCAAATCTACCTGGTCTCATTAATGCTTTATCCAAAATATCAGCCCTATTAGTACCT 30068
Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT- 288968
|| || ||||| | || || | ||| |||||||| ||||| ||||||
Sbjct 30069 GCTAAAACAACCACGTGATCAGTAGAGTCAAACCCATCCATTTCAACTAAAAGTTGATTC 30128
Query 288969 -AAGTGTTTGTTCCCTTTCATCATTTGAACCTCT--TGAATCACCCGAATCGCTCCtttt 289025
||||| || || | ||||||||| | || || || || | | |||
Sbjct 30129 AAAGTGGTT--TCACGTTCATCATTGGCTCCACTCATGTTTCCTTTGGAACGCAG----- 30181
Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085
|||||||| |||||||||||| |||| |||| | | | || | ||||| | || |
Sbjct 30182 TTTACCAATAGCATCAATTTCATCAACAAAAACAATAGAAGGGGCATTTTCACGAGCGGT 30241
Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145
||||| || | ||||| ||||| || | ||| ||| ||||||| |||||||||||
Sbjct 30242 CTTGAATAAATCACGAACACGAGATGCACCTACACCGACAAACATTTCAACAAATTCAGA 30301
Query 289146 AGCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| | || || ||||| |||| |||| ||||| || || |||| | || | ||| |
Sbjct 30302 ACCTGAAAC-TGAATAAAATGGTACACCAGCTTCACCAGCAGTTGCCTTAGCGATAAGGG 30360
Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAG 289261
| ||||| || || || || | | | |||| | ||| | || | ||| || ||
Sbjct 30361 TTTTACCAGTACCTGGAGGAC---CAGAAAGAATTGCCCCCCTAGGAATTTTAGCTCCTA 30417
Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321
| |||||| || || | | ||| |||| |||| |||| || ||| | |||||
Sbjct 30418 ATTTTTCATATTTTTCGGGATTTTGTAAGAATTTAACAAATTCCATAACTTCTTCTTTTG 30477
Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCG--TTCTTG 289371
| || | ||| || ||||| ||| |||| || | |||| ||||||
Sbjct 30478 CTTCTGCCATTCCGGCAACATCTTTAAATCTAATCTTGACATCGGTTTCTTG 30529
>seq220
Length=420333
Score = 98.7 bits (108), Expect = 3e-15
Identities = 234/351 (67%), Gaps = 2/351 (1%)
Strand=Plus/Minus
Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079
||||| |||||||| |||||||||||| |||| |||||| | | | || | ||| |
Sbjct 380825 CCTTTCTTTACCAATAGCATCAATTTCATCAACGAAAATAATAGAGGGTGCCATTTCACG 380766
Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139
||| | ||| || || | ||||| || || || | |||||| |||| || |||||
Sbjct 380765 GGCAGTCTTAAACAAATCACGGACACGAGAAGCACCGACACCAACGAACATCTCCACAAA 380706
Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199
|||||| | || || | ||||| ||| ||||| || ||| ||| ||||||
Sbjct 380705 CTCAGAACCTGAAACACTCAAGAATGGAACACCGGCTTCTCCAGCTGTTGCTTTCGCCAA 380646
Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259
|| || ||||| ||||| || || || ||| | | || | || | |||||| ||
Sbjct 380645 GAGAGTTTTACCGGTTCCTGGAGGGCCTGATAAAATTGCACCTCTGGGAATTTTTGCACC 380586
Query 289260 AGCAGACTTATATTTCTCAGGGCTCTT-TAAAAATTCTACAATTTCCTCAAGTTCATATT 289318
| ||| || | || |||| ||||| | |||| |||| | ||| | ||
Sbjct 380585 TAATTTTTCATACTT-TTGTGGATCTTGCAAAAACTTAACAAATTCCATTATTTCCTCTT 380527
Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369
||| || || || ||||| ||||| ||| |||| |||| || ||||
Sbjct 380526 TTGATTCTTCGCAGCCTGCAACATCCTTAAACTTAATTTTAACTTCATTCT 380476
>seq190
Length=159121
Score = 98.7 bits (108), Expect = 3e-15
Identities = 216/324 (67%), Gaps = 0/324 (0%)
Strand=Plus/Minus
Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612
||||||| || |||||| ||||||| | || | |||||||| || |||||||| ||
Sbjct 121911 ATCATAATGAACCATAATATCTTCCAAAGCTTTAACCAAACGACGTTGGATATAACCCGT 121852
Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
| || || || || || |||||||| ||||| | | |||| ||||||||||||| ||
Sbjct 121851 TTCAGCAGTCTTAACGGCGGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 121792
Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732
| |||| || || || | | | | || | ||||||||||| | || ||
Sbjct 121791 GAATTCTTGAGGAGTTAAACCTCTTAAATATGAATTTTCAACGAAACCCTTTGATTCTGG 121732
Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792
|||| || ||| || || ||||| | | | | || | ||| |||| || |
Sbjct 121731 AGAATAATCATCCTTAGTGAAATGTGGTAATGAACGATCAGCAAAACCGAATGGAATTCT 121672
Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACT 302852
||| || || || | || || |||| || | | ||| || |||||||| | | |
Sbjct 121671 CTTACCTTCCACAATTTGTTGACCCACACATGCAGACATTTGAGAAATATTAATAAAAGA 121612
Query 302853 GCCCTTGGAGCCAGCATTTACCAT 302876
|||||||| || | | | |||||
Sbjct 121611 ACCCTTGGAACCGGAAGTAACCAT 121588
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | || ||| ||||| || || || || ||| || | ||||| |||
Sbjct 122669 AGAATTTCCTTAAGACGAGGAACCCCCAAAGTAACATT---CTTCGAAGACACACCCGCA 122613
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
| ||||||||||||| ||| | |||||||| ||| ||||||||| ||| || ||||
Sbjct 122612 TAATGGAAAGTATTCAAAGTCATTTGAGTAGCTGGTTCACCAATAGATTGAGCAGCAACT 122553
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||| |||||||| |||||
Sbjct 122552 ACACCTACCATTTCACCTGG 122533
>seq217
Length=263222
Score = 86.0 bits (94), Expect = 2e-11
Identities = 135/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
||||| || |||||||||||||| | |||||||||||| | ||| | ||||||||| |
Sbjct 90183 GCACCATGGGCAATCATACAATCTCTTTCCATTTCACCGAAACGTAAACCACCATCTCTA 90124
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACC-CTGAGCACGATAATT 233391
|| ||||| | |||| ||| | ||| ||||| |||||| ||| || | | ||
Sbjct 90123 GATCTACCTTCAACTGGTTGTCTAGTCAAAACTTGAACTGGACCTCTG-GCTCTAGCATG 90065
Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTC 233451
|| ||||| | ||||| || ||| ||| ||||||| || |||| || | ||
Sbjct 90064 GATCTTATCATCGACCATGTGTCTCAATCTTTGATAATAAGTTGGTCCAAAGAAAACTTG 90005
Query 233452 TGCGTGTAATT 233462
||| |||||
Sbjct 90004 TGCCATTAATT 89994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471812018131752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |