Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq46 199 1e-45 seq220 98.7 3e-15 seq190 98.7 3e-15 seq217 86.0 2e-11 >seq46 Length=215403 Score = 199 bits (220), Expect = 1e-45 Identities = 379/555 (68%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 || |||||||| | | || | ||| || |||||||| ||| ||| || | ||| Sbjct 192540 CCTTGATTCTTTCTAATATCAATGAAATCAAAAATATCAGCATGCCATGGTTCTAAATAA 192599 Query 156039 ATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 | ||||||| ||| |||||| ||||| ||||| ||||| |||||||| || ||| Sbjct 192600 AGAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACGAGCAGTATTGTTG 192659 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 ||||||| | ||||||||| ||||| |||||||| ||||| || || ||||| | | Sbjct 192660 AAGACACGGACCATAGGAATGATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCA 192719 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | |||| ||||||||||||| ||||||||||| | | || || ||| | Sbjct 192720 CCAGTGGCACGAATGTTATGAATATGTAAACCAATACCACCAGCACTCTTTGAGATTAAA 192779 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || || ||||| ||||| ||||||| ||||||||||| || | ||||| | || Sbjct 192780 GCACAAGTCTTTAAAGTATCATAAATACCATCAATAGAATCTTCCTTCATTGCAACTAAG 192839 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || ||| | ||| || ||| || ||||| || |||| || || | ||||| Sbjct 192840 AAACAAGAAGACATTTGTGGGTTTGGAGTACCAGCATTAAATAAAGTTGGAGAACCATGA 192899 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAA-TCTTCTCAAGATTAGACCC 156394 ||||||| || | ||||| ||| || | || ||| |||| || || | || Sbjct 192900 GTAAAATATTTTTGGGACATTAAATTATAAGATTCAATAACTCTT-GGAATATCATCACC 192958 Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454 ||||||| |||| || ||||| | ||| || || | || ||| |||| Sbjct 192959 ATGAATACCAATAGCAACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATT 193018 Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 || || | | || | | ||||| ||| || || |||||||||| | | |||||| Sbjct 193019 AACACGTAATAAATAGGATCTTTCCAAAGTCTTGAAACCGAAATAATTATAATTAAAATC 193078 Query 156515 ACGGTTGTAATCAAT 156529 ||| | ||| |||| Sbjct 193079 ACGATCATAAACAAT 193093 Score = 131 bits (144), Expect = 5e-25 Identities = 267/393 (68%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 133214 TTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTA 133273 || ||||||| || | ||||| |||||||| |||||||| ||| ||||||||| Sbjct 149875 TTCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTG 149816 Query 133274 G--GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTAC 133331 | ||| || | | | ||||||||| | | |||||| |||| ||||| | | Sbjct 149815 GTTGAAAACTTCTCA--GCTGAAGTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCC 149758 Query 133332 AGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCA 133391 | || ||||||||| || |||||| || ||||| | |||| || ||||| |||| Sbjct 149757 AAATCATGATGGAAAACATTCATTCTGAAACTTATTCCCTTTTAATCGACACTTATATCA 149698 Query 133392 AAGATACCGTCCA---GAAGC--ACAAACTATTCAACGCCATTAGCGAATTTCCTTGTAT 133446 | ||| ||| ||||| || | | ||||| || ||| | | |||| ||||| Sbjct 149697 AGGAT-----CCAAAGGAAGCCGACTATTTGTTCAATGCTATTGACCATATTCCATGTAT 149643 Query 133447 TAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTAC 133506 || |||||| ||||||||||| ||| ||||||| ||| | || |||||| Sbjct 149642 TAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCTGA 149583 Query 133507 TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTAT 133566 | | ||||| || |||| || || || ||||| ||||||||| | ||| || || Sbjct 149582 AAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCCAT 149523 Query 133567 TTTTTGGCTTAAAAAGCGTGGTATTCTACCTGG 133599 |||||| | || ||| | ||| | | ||||| Sbjct 149522 CTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGG 149490 Score = 113 bits (124), Expect = 1e-19 Identities = 349/532 (66%), Gaps = 21/532 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | |||||||| || || ||||| || || || || || Sbjct 30009 CTATCAAATCTACCTGGTCTCATTAATGCTTTATCCAAAATATCAGCCCTATTAGTACCT 30068 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT- 288968 || || ||||| | || || | ||| |||||||| ||||| |||||| Sbjct 30069 GCTAAAACAACCACGTGATCAGTAGAGTCAAACCCATCCATTTCAACTAAAAGTTGATTC 30128 Query 288969 -AAGTGTTTGTTCCCTTTCATCATTTGAACCTCT--TGAATCACCCGAATCGCTCCtttt 289025 ||||| || || | ||||||||| | || || || || | | ||| Sbjct 30129 AAAGTGGTT--TCACGTTCATCATTGGCTCCACTCATGTTTCCTTTGGAACGCAG----- 30181 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| |||||||||||| |||| |||| | | | || | ||||| | || | Sbjct 30182 TTTACCAATAGCATCAATTTCATCAACAAAAACAATAGAAGGGGCATTTTCACGAGCGGT 30241 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||| || | ||||| ||||| || | ||| ||| ||||||| ||||||||||| Sbjct 30242 CTTGAATAAATCACGAACACGAGATGCACCTACACCGACAAACATTTCAACAAATTCAGA 30301 Query 289146 AGCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || || ||||| |||| |||| ||||| || || |||| | || | ||| | Sbjct 30302 ACCTGAAAC-TGAATAAAATGGTACACCAGCTTCACCAGCAGTTGCCTTAGCGATAAGGG 30360 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAG 289261 | ||||| || || || || | | | |||| | ||| | || | ||| || || Sbjct 30361 TTTTACCAGTACCTGGAGGAC---CAGAAAGAATTGCCCCCCTAGGAATTTTAGCTCCTA 30417 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | |||||| || || | | ||| |||| |||| |||| || ||| | ||||| Sbjct 30418 ATTTTTCATATTTTTCGGGATTTTGTAAGAATTTAACAAATTCCATAACTTCTTCTTTTG 30477 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCG--TTCTTG 289371 | || | ||| || ||||| ||| |||| || | |||| |||||| Sbjct 30478 CTTCTGCCATTCCGGCAACATCTTTAAATCTAATCTTGACATCGGTTTCTTG 30529 >seq220 Length=420333 Score = 98.7 bits (108), Expect = 3e-15 Identities = 234/351 (67%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 ||||| |||||||| |||||||||||| |||| |||||| | | | || | ||| | Sbjct 380825 CCTTTCTTTACCAATAGCATCAATTTCATCAACGAAAATAATAGAGGGTGCCATTTCACG 380766 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 ||| | ||| || || | ||||| || || || | |||||| |||| || ||||| Sbjct 380765 GGCAGTCTTAAACAAATCACGGACACGAGAAGCACCGACACCAACGAACATCTCCACAAA 380706 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | || || | ||||| ||| ||||| || ||| ||| |||||| Sbjct 380705 CTCAGAACCTGAAACACTCAAGAATGGAACACCGGCTTCTCCAGCTGTTGCTTTCGCCAA 380646 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || || ||||| ||||| || || || ||| | | || | || | |||||| || Sbjct 380645 GAGAGTTTTACCGGTTCCTGGAGGGCCTGATAAAATTGCACCTCTGGGAATTTTTGCACC 380586 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTT-TAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | ||| || | || |||| ||||| | |||| |||| | ||| | || Sbjct 380585 TAATTTTTCATACTT-TTGTGGATCTTGCAAAAACTTAACAAATTCCATTATTTCCTCTT 380527 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 ||| || || || ||||| ||||| ||| |||| |||| || |||| Sbjct 380526 TTGATTCTTCGCAGCCTGCAACATCCTTAAACTTAATTTTAACTTCATTCT 380476 >seq190 Length=159121 Score = 98.7 bits (108), Expect = 3e-15 Identities = 216/324 (67%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || |||||| ||||||| | || | |||||||| || |||||||| || Sbjct 121911 ATCATAATGAACCATAATATCTTCCAAAGCTTTAACCAAACGACGTTGGATATAACCCGT 121852 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || || || || |||||||| ||||| | | |||| ||||||||||||| || Sbjct 121851 TTCAGCAGTCTTAACGGCGGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 121792 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | |||| || || || | | | | || | ||||||||||| | || || Sbjct 121791 GAATTCTTGAGGAGTTAAACCTCTTAAATATGAATTTTCAACGAAACCCTTTGATTCTGG 121732 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 |||| || ||| || || ||||| | | | | || | ||| |||| || | Sbjct 121731 AGAATAATCATCCTTAGTGAAATGTGGTAATGAACGATCAGCAAAACCGAATGGAATTCT 121672 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACT 302852 ||| || || || | || || |||| || | | ||| || |||||||| | | | Sbjct 121671 CTTACCTTCCACAATTTGTTGACCCACACATGCAGACATTTGAGAAATATTAATAAAAGA 121612 Query 302853 GCCCTTGGAGCCAGCATTTACCAT 302876 |||||||| || | | | ||||| Sbjct 121611 ACCCTTGGAACCGGAAGTAACCAT 121588 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| ||||| || || || || ||| || | ||||| ||| Sbjct 122669 AGAATTTCCTTAAGACGAGGAACCCCCAAAGTAACATT---CTTCGAAGACACACCCGCA 122613 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||||| ||| | |||||||| ||| ||||||||| ||| || |||| Sbjct 122612 TAATGGAAAGTATTCAAAGTCATTTGAGTAGCTGGTTCACCAATAGATTGAGCAGCAACT 122553 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| |||||||| ||||| Sbjct 122552 ACACCTACCATTTCACCTGG 122533 >seq217 Length=263222 Score = 86.0 bits (94), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| || |||||||||||||| | |||||||||||| | ||| | ||||||||| | Sbjct 90183 GCACCATGGGCAATCATACAATCTCTTTCCATTTCACCGAAACGTAAACCACCATCTCTA 90124 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACC-CTGAGCACGATAATT 233391 || ||||| | |||| ||| | ||| ||||| |||||| ||| || | | || Sbjct 90123 GATCTACCTTCAACTGGTTGTCTAGTCAAAACTTGAACTGGACCTCTG-GCTCTAGCATG 90065 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTC 233451 || ||||| | ||||| || ||| ||| ||||||| || |||| || | || Sbjct 90064 GATCTTATCATCGACCATGTGTCTCAATCTTTGATAATAAGTTGGTCCAAAGAAAACTTG 90005 Query 233452 TGCGTGTAATT 233462 ||| ||||| Sbjct 90004 TGCCATTAATT 89994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812018131752