Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq276 145 1e-29 seq217 86.0 8e-12 seq124 82.4 1e-10 >seq276 Length=61907 Score = 145 bits (160), Expect = 1e-29 Identities = 246/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 172460 ||||| || ||| |||| |||||||||||| |||||| || | ||| | ||| || Sbjct 8972 GAACTCTTGTGGTTTATAGCTGGTTCAACTGATGCAAAACTTTTGAGTGACAAAGGCGTG 8913 Query 172461 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 172520 ||| ||||| | | ||| || || ||||||| ||| ||| || || || ||| | | Sbjct 8912 AAAATTTGGGAAGGTAACGGATCACGTGAATATTTGGATAAATTAGGATTGACTCATCGT 8853 Query 172521 AAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT 172580 |||||||||||||| || ||||||| || |||||||||||| || ||| ||||| Sbjct 8852 CGTGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATAT 8793 Query 172581 ATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAAT 172640 | || |||||| | ||||| || || |||||| || |||||| | ||| || Sbjct 8792 GTGGATTGTGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGATGTTATAAAG 8733 Query 172641 ACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTACCTCAA 172700 | ||| | | || ||| | |||||| || | || | |||||| |||| | Sbjct 8732 AAATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGAT 8673 Query 172701 CTTGATAAAATGGTTCTTCCTCCTTGCCAT-ACTTTAGCACAATTTTATGTCAG 172753 ||| |||||||| || || || || ||| |||| | ||||||||||| || Sbjct 8672 TTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTG-TCAATTTTATGTTAG 8620 >seq217 Length=263222 Score = 86.0 bits (94), Expect = 8e-12 Identities = 175/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 194539 GGGTCTGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATAAAATTTTTATA 194598 |||| |||| |||||| || ||||||||| ||| || | | || |||| | Sbjct 89957 GGGTTTGAAGTCATGTATAATGGTCATACTGGTAAGAAA-TTAATGGCACAAGTTTTCTT 90015 Query 194599 GGG-CCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAG 194657 || ||||||||||| || | | | ||||||||| | ||||| || |||||||| || Sbjct 90016 TGGACCAACTTATTATCAAAGATTGAGACACATGGTCGATGATAAGATCCATGCTAG-AG 90074 Query 194658 TCA-TGGGCAAGTAACTACTTTACA-TCGACAACCAAATTGTGGTCGTTCTCAAGGTGGA 194715 || || | ||| | | ||| | | |||||||| | ||| | ||| || ||| Sbjct 90075 CCAGAGGTCCAGT-TCAAGTTTTGACTAGACAACCAGTTGAAGGTAGATCTAGAGATGGT 90133 Query 194716 GGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTC 194775 |||||| | || || |||||||||| ||| ||||| | | ||||||||| | ||| Sbjct 90134 GGTTTACGTTTCGGTGAAATGGAAAGAGATTGTATGATTGCCCATGGTGCGGCAGGTTTC 90193 Query 194776 TTAAATGAAAGA 194787 ||||| |||||| Sbjct 90194 TTAAAGGAAAGA 90205 >seq124 Length=181928 Score = 82.4 bits (90), Expect = 1e-10 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 194623 AAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGG--CAAGTAACTACTTTAC 194680 ||||| |||||| |||||| |||||||| ||| | | || |||| ||| || Sbjct 174197 AAACATATGGTTTTGGATAAGATGCATGCAAGA-GCAAGAGGTCCAAGAGCAGTCTTAAC 174139 Query 194681 ATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAA 194740 | ||||||||| ||| | || || ||| || |||||||| ||||||||||||| Sbjct 174138 -TAGACAACCAACCGAAGGTAGATCAAGAGATGGTGGGTTAAGATTGGGAGAAATGGAAA 174080 Query 194741 AAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATT 194800 ||| ||| || | | |||||||| | ||||| || |||||| | | | || Sbjct 174079 GAGATTGTGTTATTGCTTATGGTGCTTCACAATTGTTGTTGGAAAGATTAATGATCAGTT 174020 Query 194801 CTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 194838 | ||| ||||| |||| ||||| || | |||||||| Sbjct 174019 CAGATGCTTTTGAAGTTGATGTATGTAATAAATGTGGT 173982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632487259788480