Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq253 143 2e-29 seq254 118 1e-21 seq46 89.7 5e-13 >seq253 Length=293773 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24699 ATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAG 24758 |||| ||||| ||||| ||||||| |||||||||| |||||||| | ||||| ||| Sbjct 106763 ATACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAAT 106704 Query 24759 CCACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 | | ||||| | || |||| ||| | ||| || ||||| || ||||| || || || Sbjct 106703 CTTCTGACACCATTGATAACGTCAAATCTAAA-ATTCAAGATAAGGAAGGTATCCCACCT 106645 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 |||||||||||||| ||||| || || ||||| | || ||| |||| | || || Sbjct 106644 GATCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGAC 106585 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||||||||| || |||| ||||| || ||||| | || || Sbjct 106584 TACAACATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106532 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || |||| ||||| || ||||| | ||||| ||| | | Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | ||| || ||||| || ||||| || || || ||||| Sbjct 106470 GACACTATTGATAACGTTAAATCTAAA-ATTCAAGATAAGGAAGGTATCCCACCTGATCA 106412 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| ||||| || || ||||| | || ||| |||| | || || || || Sbjct 106411 ACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAA 106352 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || |||| ||||| || ||||| | || || Sbjct 106351 CATCCAAAAGGAATCTACTTTACATTTGGTTTTAAGATTGAGAGGTGG 106304 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || |||| ||||| || ||||| | ||||| ||| | | Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | ||| || ||||| || ||||| || || || || || Sbjct 106242 GACACTATTGATAACGTTAAATCTAAA-ATTCAAGATAAGGAAGGTATTCCACCTGACCA 106184 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| ||||| || || ||||| | || ||| |||| | || || || || Sbjct 106183 ACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAA 106124 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 ||| ||||||||||| ||| | ||||| || ||| |||| Sbjct 106123 CATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATT 106085 >seq254 Length=76587 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||| ||||| || ||||| | ||||| ||| | || Sbjct 43140 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCTTCC 43081 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||| || ||||| || || || |||||| Sbjct 43080 GACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGATCAA 43021 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || |||||||| || || || | || ||| |||| | || || || ||| Sbjct 43020 CAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 42961 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || ||||||||||| || |||||||||| || |||| Sbjct 42960 ATCCAAAAGGAATCTACTTTACACTTGGTCTTAAGATT 42923 >seq46 Length=215403 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| ||||| || || ||||| || ||| ||||| |||||||| Sbjct 192149 AATTGAAGCTAAATTGCAAACAGCAACTTCTTCTGGGGAAGAATATTCAACAATTTCACA 192208 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||| ||||| | | || ||| |||| || || | ||||||| ||||| |||||||| Sbjct 192209 ACATAAATTGGAAGATTTAATCATACCCAAGTTCTTTTGATTGGATTTTCTATTACAAGC 192268 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 |||||| || | |||| | || || |||||||| ||| | |||| |||| Sbjct 192269 ATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGAGCTTCTAAAATG 192320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895935378880