Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq276 167 3e-36 seq124 95.1 2e-14 seq217 86.0 8e-12 seq286 82.4 1e-10 seq190 82.4 1e-10 >seq276 Length=61907 Score = 167 bits (184), Expect = 3e-36 Identities = 301/436 (69%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 168449 ACAATTGGAATTTGATTTAAGTGGTGGAACTATCCCACTTCTTACTACCaaaaaaaTTGT 168508 |||||| ||||||||| | || || |||| ||| | |||||||| | | || Sbjct 9051 ACAATTAAGATTTGATTTGTCTAATGATACATTCCCCCTTTTGACTACCAAGAGA---GT 8995 Query 168509 ATACACTAAC---ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAA 168565 || | | || || || | ||||| || ||| ||||| |||||||||||| |||| Sbjct 8994 ATTCTCAAAAGGTATCATTCATGAACTCTTGTGGTTTATAGCTGGTTCAACTGATGCAAA 8935 Query 168566 ACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGA 168625 || || | ||| | ||| || ||| ||||| | | ||| || || ||||||| ||| || Sbjct 8934 ACTTTTGAGTGACAAAGGCGTGAAAATTTGGGAAGGTAACGGATCACGTGAATATTTGGA 8875 Query 168626 TTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATG 168685 | || || || || | | ||||||||||||||||| ||||||| || ||||| Sbjct 8874 TAAATTAGGATTGACTCATCGTCGTGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATG 8815 Query 168686 GAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGA 168745 ||||||| || ||| ||||| | || |||||| | ||||| ||||| |||||| || Sbjct 8814 GAGACATTTTGGTGCTGAATATGTGGATTGTGATGCTGATTATACCGGTCAAGGATATGA 8755 Query 168746 CCAATTAAGTCAAACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAAT 168805 |||||| | |||||| | ||| | | ||||| | |||||||||| | || Sbjct 8754 TCAATTACAAGATGTTATAAAGAAATTAAAGACGAATCCATATGATAGAAGAATTATCAT 8695 Query 168806 TAATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACA-CTTTAG 168864 | |||| | ||| | ||| |||||||| || || || ||||| |||| | Sbjct 8694 GTCTGCTTGGAACCCACCTGATTTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTG 8635 Query 168865 TGCAATTTTATGTAAG 168880 | ||||||||||| || Sbjct 8634 T-CAATTTTATGTTAG 8620 >seq124 Length=181928 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 193827 AAACATATGGTTAAGGATAAAATGCATGCTAGA---AGTCATGGACAAGTGACTACTTTA 193883 |||||||||||| |||||| |||||||| ||| || | | |||| | ||| | Sbjct 174197 AAACATATGGTTTTGGATAAGATGCATGCAAGAGCAAG--AGGTCCAAGAGCAGTCTTAA 174140 Query 193884 CATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAG 193943 | | ||||||||| ||| | || || ||| || |||||||| ||||||||||| Sbjct 174139 C-TAGACAACCAACCGAAGGTAGATCAAGAGATGGTGGGTTAAGATTGGGAGAAATGGAA 174081 Query 193944 AAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTAT 194003 | ||| ||| || | | | |||||||| | ||||| ||| |||||| | | | | Sbjct 174080 AGAGATTGTGTTATTGCTTATGGTGCTTCACAATTGTTGTTGGAAAGATTAATGATCAGT 174021 Query 194004 TCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 194042 || ||| ||||| |||| ||||| || | |||||||| Sbjct 174020 TCAGATGCTTTTGAAGTTGATGTATGTAATAAATGTGGT 173982 >seq217 Length=263222 Score = 86.0 bits (94), Expect = 8e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 114834 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGG 114893 ||||||||| || ||||| | | ||||| ||| | ||||| |||| ||| || Sbjct 144240 TACTTATGGTCGTGTTGCTCCTCGTTCTGGATTAGCTGTTAAGCATGGTATTTCTACTGG 144299 Query 114894 AGCAGGTGTTATCGATGAAGATTATCAAGAT-AATTTAATGGTTATTTTACATAACCATT 114952 || |||||||| |||| |||||| || | || |||| |||| ||||| ||| |||| Sbjct 144300 TGCTGGTGTTATTGATGCTGATTATAGAGGTGAAGTTAA-GGTTGTTTTATTTAATCATT 144358 Query 114953 CAGATGTTGATTTTAAAATTGAAGTTAAAGATAGAATTGCTCAATT 114998 ||||| |||||| || || | | | ||||||||||| ||||| Sbjct 144359 CAGATAAGGATTTTGAAGTTAAGGCTGGTGATAGAATTGCACAATT 144404 >seq286 Length=252059 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 111144 TTAATAATTGATGAAATAAGTATGCTTCATCCAGAGCTT-TTTAACAAATTAGAAAAAGT 111202 ||||| ||||||||||| ||| || || | | ||| ||| | ||||||||| |||| Sbjct 4882 TTAATTATTGATGAAATTTCAATGATTGATGGA-ATCTTGTTTGAAAAATTAGAAGAAGT 4940 Query 111203 AGCGAGACTTGTTCGAGAAAATAANNNNNAATTTGGTGGAATACAATTAATAGTTACAGG 111262 || ||| ||||| || ||| |||||||||||| ||| | || |||||| Sbjct 4941 TGCTAGAATTGTTAGAACTAATTCAAGACCATTTGGTGGAATTCAAATTGTATGTACAGG 5000 Query 111263 AGATTTGTTTCAATTACCTCCGGT 111286 ||||| |||||||||||||| || Sbjct 5001 TGATTTTTTTCAATTACCTCCAGT 5024 >seq190 Length=159121 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||||||| || | ||| |||||||||| ||||| ||||| |||||||||||||||| Sbjct 120761 TGAATTTGTCTGTTACTTCTCCATATAATGCGGATTTCGATGGTGATGAAATGAATTTAC 120820 Query 52027 ATGTTCCTCAATC 52039 |||| |||||||| Sbjct 120821 ATGTCCCTCAATC 120833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635175249842880