Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq276 167 3e-36
seq124 95.1 2e-14
seq217 86.0 8e-12
seq286 82.4 1e-10
seq190 82.4 1e-10
>seq276
Length=61907
Score = 167 bits (184), Expect = 3e-36
Identities = 301/436 (69%), Gaps = 8/436 (2%)
Strand=Plus/Minus
Query 168449 ACAATTGGAATTTGATTTAAGTGGTGGAACTATCCCACTTCTTACTACCaaaaaaaTTGT 168508
|||||| ||||||||| | || || |||| ||| | |||||||| | | ||
Sbjct 9051 ACAATTAAGATTTGATTTGTCTAATGATACATTCCCCCTTTTGACTACCAAGAGA---GT 8995
Query 168509 ATACACTAAC---ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAA 168565
|| | | || || || | ||||| || ||| ||||| |||||||||||| ||||
Sbjct 8994 ATTCTCAAAAGGTATCATTCATGAACTCTTGTGGTTTATAGCTGGTTCAACTGATGCAAA 8935
Query 168566 ACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGA 168625
|| || | ||| | ||| || ||| ||||| | | ||| || || ||||||| ||| ||
Sbjct 8934 ACTTTTGAGTGACAAAGGCGTGAAAATTTGGGAAGGTAACGGATCACGTGAATATTTGGA 8875
Query 168626 TTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATG 168685
| || || || || | | ||||||||||||||||| ||||||| || |||||
Sbjct 8874 TAAATTAGGATTGACTCATCGTCGTGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATG 8815
Query 168686 GAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGA 168745
||||||| || ||| ||||| | || |||||| | ||||| ||||| |||||| ||
Sbjct 8814 GAGACATTTTGGTGCTGAATATGTGGATTGTGATGCTGATTATACCGGTCAAGGATATGA 8755
Query 168746 CCAATTAAGTCAAACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAAT 168805
|||||| | |||||| | ||| | | ||||| | |||||||||| | ||
Sbjct 8754 TCAATTACAAGATGTTATAAAGAAATTAAAGACGAATCCATATGATAGAAGAATTATCAT 8695
Query 168806 TAATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACA-CTTTAG 168864
| |||| | ||| | ||| |||||||| || || || ||||| |||| |
Sbjct 8694 GTCTGCTTGGAACCCACCTGATTTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTG 8635
Query 168865 TGCAATTTTATGTAAG 168880
| ||||||||||| ||
Sbjct 8634 T-CAATTTTATGTTAG 8620
>seq124
Length=181928
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 193827 AAACATATGGTTAAGGATAAAATGCATGCTAGA---AGTCATGGACAAGTGACTACTTTA 193883
|||||||||||| |||||| |||||||| ||| || | | |||| | ||| |
Sbjct 174197 AAACATATGGTTTTGGATAAGATGCATGCAAGAGCAAG--AGGTCCAAGAGCAGTCTTAA 174140
Query 193884 CATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAG 193943
| | ||||||||| ||| | || || ||| || |||||||| |||||||||||
Sbjct 174139 C-TAGACAACCAACCGAAGGTAGATCAAGAGATGGTGGGTTAAGATTGGGAGAAATGGAA 174081
Query 193944 AAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTAT 194003
| ||| ||| || | | | |||||||| | ||||| ||| |||||| | | | |
Sbjct 174080 AGAGATTGTGTTATTGCTTATGGTGCTTCACAATTGTTGTTGGAAAGATTAATGATCAGT 174021
Query 194004 TCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 194042
|| ||| ||||| |||| ||||| || | ||||||||
Sbjct 174020 TCAGATGCTTTTGAAGTTGATGTATGTAATAAATGTGGT 173982
>seq217
Length=263222
Score = 86.0 bits (94), Expect = 8e-12
Identities = 120/166 (72%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 114834 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGG 114893
||||||||| || ||||| | | ||||| ||| | ||||| |||| ||| ||
Sbjct 144240 TACTTATGGTCGTGTTGCTCCTCGTTCTGGATTAGCTGTTAAGCATGGTATTTCTACTGG 144299
Query 114894 AGCAGGTGTTATCGATGAAGATTATCAAGAT-AATTTAATGGTTATTTTACATAACCATT 114952
|| |||||||| |||| |||||| || | || |||| |||| ||||| ||| ||||
Sbjct 144300 TGCTGGTGTTATTGATGCTGATTATAGAGGTGAAGTTAA-GGTTGTTTTATTTAATCATT 144358
Query 114953 CAGATGTTGATTTTAAAATTGAAGTTAAAGATAGAATTGCTCAATT 114998
||||| |||||| || || | | | ||||||||||| |||||
Sbjct 144359 CAGATAAGGATTTTGAAGTTAAGGCTGGTGATAGAATTGCACAATT 144404
>seq286
Length=252059
Score = 82.4 bits (90), Expect = 1e-10
Identities = 105/144 (73%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 111144 TTAATAATTGATGAAATAAGTATGCTTCATCCAGAGCTT-TTTAACAAATTAGAAAAAGT 111202
||||| ||||||||||| ||| || || | | ||| ||| | ||||||||| ||||
Sbjct 4882 TTAATTATTGATGAAATTTCAATGATTGATGGA-ATCTTGTTTGAAAAATTAGAAGAAGT 4940
Query 111203 AGCGAGACTTGTTCGAGAAAATAANNNNNAATTTGGTGGAATACAATTAATAGTTACAGG 111262
|| ||| ||||| || ||| |||||||||||| ||| | || ||||||
Sbjct 4941 TGCTAGAATTGTTAGAACTAATTCAAGACCATTTGGTGGAATTCAAATTGTATGTACAGG 5000
Query 111263 AGATTTGTTTCAATTACCTCCGGT 111286
||||| |||||||||||||| ||
Sbjct 5001 TGATTTTTTTCAATTACCTCCAGT 5024
>seq190
Length=159121
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026
|||||||| || | ||| |||||||||| ||||| ||||| ||||||||||||||||
Sbjct 120761 TGAATTTGTCTGTTACTTCTCCATATAATGCGGATTTCGATGGTGATGAAATGAATTTAC 120820
Query 52027 ATGTTCCTCAATC 52039
|||| ||||||||
Sbjct 120821 ATGTCCCTCAATC 120833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635175249842880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |