Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq276 145 1e-29 seq217 86.0 8e-12 seq124 86.0 8e-12 >seq276 Length=61907 Score = 145 bits (160), Expect = 1e-29 Identities = 252/364 (69%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 171603 TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGA 171662 |||| || | ||||| || ||| |||| |||||||||||| |||||| || | ||| Sbjct 8982 TATCATTCATGAACTCTTGTGGTTTATAGCTGGTTCAACTGATGCAAAACTTTTGAGTGA 8923 Query 171663 TATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTT 171722 | ||| || ||| ||||| | | ||| || || ||||||| ||| ||| || || || Sbjct 8922 CAAAGGCGTGAAAATTTGGGAAGGTAACGGATCACGTGAATATTTGGATAAATTAGGATT 8863 Query 171723 TACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 171782 ||| | | ||||||||||||||||| ||||||| || |||||||||||| || Sbjct 8862 GACTCATCGTCGTGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGG 8803 Query 171783 GGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCA 171842 ||| ||||| | || ||| || | ||||| || || |||||| || |||||| | Sbjct 8802 TGCTGAATATGTGGATTGTGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGA 8743 Query 171843 AACTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAA 171902 ||| || | ||| | | || ||| | |||||| || | || | |||||| Sbjct 8742 TGTTATAAAGAAATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAA 8683 Query 171903 TGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCA-CACTTTAGCACAATTTTATG 171961 |||| | ||| |||||||| || || || || || |||| | |||||||||| Sbjct 8682 CCCACCTGATTTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTG-TCAATTTTATG 8624 Query 171962 TCAG 171965 | || Sbjct 8623 TTAG 8620 >seq217 Length=263222 Score = 86.0 bits (94), Expect = 8e-12 Identities = 175/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 193296 GGGTCTGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATAAAATTTTTATA 193355 |||| |||| |||||| || ||||||||| ||| || | | || |||| | Sbjct 89957 GGGTTTGAAGTCATGTATAATGGTCATACTGGTAAGAAA-TTAATGGCACAAGTTTTCTT 90015 Query 193356 GGG-CCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAG 193414 || ||||||||||| || | | | ||||||||| | ||||| || |||||||| || Sbjct 90016 TGGACCAACTTATTATCAAAGATTGAGACACATGGTCGATGATAAGATCCATGCTAG-AG 90074 Query 193415 TCA-TGGGCAAGTGACTACTTTACA-TCGACAACCAAATTGTGGTCGTTCTCAAGGTGGA 193472 || || | ||| | | ||| | | |||||||| | ||| | ||| || ||| Sbjct 90075 CCAGAGGTCCAGT-TCAAGTTTTGACTAGACAACCAGTTGAAGGTAGATCTAGAGATGGT 90133 Query 193473 GGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTC 193532 |||||| | || || |||||||||| ||| ||||| | | ||||||||| | ||| Sbjct 90134 GGTTTACGTTTCGGTGAAATGGAAAGAGATTGTATGATTGCCCATGGTGCGGCAGGTTTC 90193 Query 193533 TTAAATGAAAGA 193544 ||||| |||||| Sbjct 90194 TTAAAGGAAAGA 90205 >seq124 Length=181928 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 193380 AAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGG--CAAGTGACTACTTTAC 193437 ||||| |||||| |||||| |||||||| ||| | | || |||| | ||| || Sbjct 174197 AAACATATGGTTTTGGATAAGATGCATGCAAGA-GCAAGAGGTCCAAGAGCAGTCTTAAC 174139 Query 193438 ATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAA 193497 | ||||||||| ||| | || || ||| || |||||||| ||||||||||||| Sbjct 174138 -TAGACAACCAACCGAAGGTAGATCAAGAGATGGTGGGTTAAGATTGGGAGAAATGGAAA 174080 Query 193498 AAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATT 193557 ||| ||| || | | |||||||| | ||||| || |||||| | | | || Sbjct 174079 GAGATTGTGTTATTGCTTATGGTGCTTCACAATTGTTGTTGGAAAGATTAATGATCAGTT 174020 Query 193558 CTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 193595 | ||| ||||| |||| ||||| || | |||||||| Sbjct 174019 CAGATGCTTTTGAAGTTGATGTATGTAATAAATGTGGT 173982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628528874434560