Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_023615.1
Length=196456
Score E
Sequences producing significant alignments: (Bits) Value
seq276 145 1e-29
seq217 86.0 8e-12
seq124 86.0 8e-12
>seq276
Length=61907
Score = 145 bits (160), Expect = 1e-29
Identities = 252/364 (69%), Gaps = 2/364 (1%)
Strand=Plus/Minus
Query 171603 TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGA 171662
|||| || | ||||| || ||| |||| |||||||||||| |||||| || | |||
Sbjct 8982 TATCATTCATGAACTCTTGTGGTTTATAGCTGGTTCAACTGATGCAAAACTTTTGAGTGA 8923
Query 171663 TATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTT 171722
| ||| || ||| ||||| | | ||| || || ||||||| ||| ||| || || ||
Sbjct 8922 CAAAGGCGTGAAAATTTGGGAAGGTAACGGATCACGTGAATATTTGGATAAATTAGGATT 8863
Query 171723 TACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 171782
||| | | ||||||||||||||||| ||||||| || |||||||||||| ||
Sbjct 8862 GACTCATCGTCGTGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGG 8803
Query 171783 GGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCA 171842
||| ||||| | || ||| || | ||||| || || |||||| || |||||| |
Sbjct 8802 TGCTGAATATGTGGATTGTGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGA 8743
Query 171843 AACTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAA 171902
||| || | ||| | | || ||| | |||||| || | || | ||||||
Sbjct 8742 TGTTATAAAGAAATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAA 8683
Query 171903 TGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCA-CACTTTAGCACAATTTTATG 171961
|||| | ||| |||||||| || || || || || |||| | ||||||||||
Sbjct 8682 CCCACCTGATTTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTG-TCAATTTTATG 8624
Query 171962 TCAG 171965
| ||
Sbjct 8623 TTAG 8620
>seq217
Length=263222
Score = 86.0 bits (94), Expect = 8e-12
Identities = 175/252 (69%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 193296 GGGTCTGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATAAAATTTTTATA 193355
|||| |||| |||||| || ||||||||| ||| || | | || |||| |
Sbjct 89957 GGGTTTGAAGTCATGTATAATGGTCATACTGGTAAGAAA-TTAATGGCACAAGTTTTCTT 90015
Query 193356 GGG-CCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAG 193414
|| ||||||||||| || | | | ||||||||| | ||||| || |||||||| ||
Sbjct 90016 TGGACCAACTTATTATCAAAGATTGAGACACATGGTCGATGATAAGATCCATGCTAG-AG 90074
Query 193415 TCA-TGGGCAAGTGACTACTTTACA-TCGACAACCAAATTGTGGTCGTTCTCAAGGTGGA 193472
|| || | ||| | | ||| | | |||||||| | ||| | ||| || |||
Sbjct 90075 CCAGAGGTCCAGT-TCAAGTTTTGACTAGACAACCAGTTGAAGGTAGATCTAGAGATGGT 90133
Query 193473 GGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTC 193532
|||||| | || || |||||||||| ||| ||||| | | ||||||||| | |||
Sbjct 90134 GGTTTACGTTTCGGTGAAATGGAAAGAGATTGTATGATTGCCCATGGTGCGGCAGGTTTC 90193
Query 193533 TTAAATGAAAGA 193544
||||| ||||||
Sbjct 90194 TTAAAGGAAAGA 90205
>seq124
Length=181928
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 193380 AAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGG--CAAGTGACTACTTTAC 193437
||||| |||||| |||||| |||||||| ||| | | || |||| | ||| ||
Sbjct 174197 AAACATATGGTTTTGGATAAGATGCATGCAAGA-GCAAGAGGTCCAAGAGCAGTCTTAAC 174139
Query 193438 ATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAA 193497
| ||||||||| ||| | || || ||| || |||||||| |||||||||||||
Sbjct 174138 -TAGACAACCAACCGAAGGTAGATCAAGAGATGGTGGGTTAAGATTGGGAGAAATGGAAA 174080
Query 193498 AAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATT 193557
||| ||| || | | |||||||| | ||||| || |||||| | | | ||
Sbjct 174079 GAGATTGTGTTATTGCTTATGGTGCTTCACAATTGTTGTTGGAAAGATTAATGATCAGTT 174020
Query 193558 CTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 193595
| ||| ||||| |||| ||||| || | ||||||||
Sbjct 174019 CAGATGCTTTTGAAGTTGATGTATGTAATAAATGTGGT 173982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628528874434560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |