Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq46 306 9e-78
seq242 221 3e-52
seq259 150 4e-31
seq190 118 3e-21
seq271 98.7 2e-15
seq245 93.3 1e-13
seq35 89.7 1e-12
>seq46
Length=215403
Score = 306 bits (338), Expect = 9e-78
Identities = 605/887 (68%), Gaps = 9/887 (1%)
Strand=Plus/Minus
Query 110279 TTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTT 110338
|||| |||||| | | || | | ||||| |||||||| ||| | ||| | | |||||
Sbjct 193088 TTATGATCGTGATTTTAATTATAATTATTTCGGTTTCAAGACTTTGGAAAGATCCTATTT 193029
Query 110339 ACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGAT 110398
| | ||||| ||||| | | |||| | || ||||| | | | | ||||| ||
Sbjct 193028 ATTACGTGTTAATGGTAAAGTTGCTGAAAGACCACAACATTTAATCATGAGAGTTGCTAT 192969
Query 110399 TGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAA 110458
|||||||||||| |||||||| | |||||||||| |||| || || | ||||
Sbjct 192968 TGGTATTCATGGTGATGATATTCCAAGAGTTATTGAATCTTATAATTTAATGTCCCAAAA 192909
Query 110459 GAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGC 110518
| || ||||| | |||| || ||||||| || || ||| |||| || |
Sbjct 192908 ATATTTTACTCATGGTTCTCCAACTTTATTTAATGCTGGTACTCCAAACCCACAAATGTC 192849
Query 110519 TTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTA 110577
|||||| |||||| | | ||| || || ||||||||||| |||||||||||| || |||
Sbjct 192848 TTCTTG-TTTCTTAGTTGCAATGAAGGAAGATTCTATTGATGGTATTTATGATACT-TTA 192791
Query 110578 AAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATT 110636
|||| |||| | || || || | |||| || |||||| | || ||||| | |||
Sbjct 192790 AAGACTTGTGCTTTAATCTCAAAGAGTGCTGGTGGTATTGGTTTACATATTCATAACATT 192731
Query 110637 CGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATG 110696
|| | | || || |||| || | || ||| |||| | || | |||| |||
Sbjct 192730 CGTGCCACTGGTGCTTATATTGCTGGTACTAATGGTACTTCCAACGGTATCATTCCTATG 192671
Query 110697 TTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGC 110753
| | ||||||||| | ||||| ||||| ||||||||||||| |||| ||
Sbjct 192670 GTCCGTGTCTTCAACAATACTGCTCGTTATGTTGATCAAGGTGGTAACAAGAGACCAGGT 192611
Query 110754 TCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGT 110813
| |||||| | ||| | ||||| |||||| | ||||| ||||| ||| | || || |
Sbjct 192610 GCTTTTGCTCTTTATTTAGAACCATGGCATGCTGATATTTTTGATTTCATTGATATTAGA 192551
Query 110814 AAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCA 110873
|| |||||||| |||||| |||||| | |||||||| || | |||||| ||
Sbjct 192550 AAGAATCAAGGTAAAGAAGAAATTAGAGCAAGAGATTTATTCCCAGCTTTATGGATTCCA 192491
Query 110874 GATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGT 110933
|||||||||||||| | ||| || |||| || ||| || | | | ||| ||
Sbjct 192490 GATTTATTCATGAAGAGAGTTGAACAAAACGGTGATTGGACTTTATTCTCTCCAAATGAA 192431
Query 110934 TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993
|||| || || | ||||| || || | || ||||| | | || ||||||||||||
Sbjct 192430 GCTCCAGGATTACCAGATGTTTACGGTGATGAATTTGAGCAATTATATGAAAAATATGAA 192371
Query 110994 AAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGA 111052
| ||| || | | | ||||| || ||||||| || | |||| || | ||
Sbjct 192370 AGAGAGGGTCGTGGTAGACAAAC-CGTTAAAGCTCAAAAATTATGGTATTCCATTTTAGA 192312
Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATC 111112
| | ||| ||||||||| ||||| | ||| || ||||||||| | |||| | |||||
Sbjct 192311 AGCTCAAACTGAAACTGGTACTCCATTTATGTTATATAAAGATGCTTGTAATAGAAAATC 192252
Query 111113 TAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159
||||||| ||| || || | ||||| ||| ||||| || ||||
Sbjct 192251 CAATCAAAAGAACTTGGGTATGATTAAATCTTCCAATTTATGTTGTG 192205
Score = 127 bits (140), Expect = 5e-24
Identities = 263/390 (67%), Gaps = 6/390 (2%)
Strand=Plus/Minus
Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854
|||| |||||| || || |||||| ||| |||||| ||| ||| || ||| ||
Sbjct 149644 ATTAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCT 149585
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
|||| | || || || ||| |||||||||||| ||||| ||| | ||| |
Sbjct 149584 GAAAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCC 149525
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||||||| | |||||| | || || |||||||| | |||| ||||| |||| |||
Sbjct 149524 ATCTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATC 149465
Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCT 132031
| |||||||||| || |||||||| ||||| | ||||| ||| | || |
Sbjct 149464 TGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCT---CCCATTTGGAA 149408
Query 132032 GATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091
||| || | || | | | |||| || | |||| || || |||| ||| || |||
Sbjct 149407 AATAGACCAGCTGCAGAAATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAG 149348
Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151
|| || | || || || || ||| | |||| | || ||||| | | | |||
Sbjct 149347 GAATTCTTCACTGATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGT 149288
Query 132152 GAGTACATTGAATTCGTTGCTGATCGTTTA 132181
| ||| ||||||| ||||||||| | |||
Sbjct 149287 CAATACGTTGAATTTGTTGCTGATAGATTA 149258
>seq242
Length=99814
Score = 221 bits (244), Expect = 3e-52
Identities = 600/907 (66%), Gaps = 21/907 (2%)
Strand=Plus/Minus
Query 110265 AATAATATTATCGATTATACTCGTGACTATGATATTGAC-TATTTTGGTTTCAAAACTCT 110323
|||||| | || ||| | |||| || | ||| ||| | ||||||||| | ||||| |
Sbjct 9027 AATAATTTGATTGATAAATCTCGAGATTTTGA-ATTATCATATTTTGGTGTGAAAACATT 8969
Query 110324 TGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTT 110383
|| | | |||||| | | ||||| || || |||| ||| ||| | ||
Sbjct 8968 AGAGAATTCATATTTATTAAAAATGAATGGAGAAATTGCTGAAATTCCCCAATTTTTATT 8909
Query 110384 TCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGA 110443
| | | || || || || |||||| ||||| | | | ||||| ||| |||||
Sbjct 8908 TTTAAGGGTAGCTATCGGAATTCATTTTAATGATTTAGATGAAGTTATGGAAACGTATGA 8849
Query 110444 TGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAA 110503
| || | || || | ||||| ||| | || || ||| || || |||| |||
Sbjct 8848 TTTAATGTCCAATAAATATTTCATTCACGCTTCACCAACATTATACAATGCCGGAAGTAA 8789
Query 110504 TGGAGGACAATTGGCTT----CTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAG 110559
| ||||| ||| | || ||| | || | || || ||||| || || || |
Sbjct 8788 TTT----CAATTTCCTTTCTTCATGTTTTTTACTTGCTATGAAGGATGACTCAATAGATG 8733
Query 110560 GTATTTAT-GATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT 110618
| |||||| || || | | || || || | || || ||| || ||||| |||||
Sbjct 8732 GGATTTATAGAACCT-TGCATGAGACAGCATTGATATCAAAAGCATCAGGAGGGATTGGA 8674
Query 110619 ATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCA 110678
|||| || ||| |||| || || || ||| || |||||| | | || || ||||
Sbjct 8673 GTTCATGTCCATAATATCCGATCCAACGGATCATTTATCGCTAGTACAAATGGGACTTCT 8614
Query 110679 ACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT 110738
| ||| | ||||||||||| ||||| || ||| | || |||| |||||| |||||||
Sbjct 8613 AACGGATTGGTTCCAATGTTGAGAGTATTTAACAATACGGCAAGATATGTTGATCAAGGA 8554
Query 110739 GGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTT 110795
||| || | | || |||| || | ||| | |||||||||||| ||||||||||
Sbjct 8553 GGTGGGAAACGTCCAGGAGCATTCGCGGTATATATTGAACCTTGGCATGGAGATATATTT 8494
Query 110796 GAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTT 110855
|| | || ||| | | || ||||| || ||||||||| ||| | | |||||||||
Sbjct 8493 GATATTTTGGAAATGAGAAAGAATCATGGGAATGAAGAACATAGAACTAGAGATTTATTT 8434
Query 110856 TATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCT 110915
|||| | | ||||| | ||||| || ||||| | ||| ||||| || |||||
Sbjct 8433 TATGGATTATGGATACCTGATTTGTTTATGAAGAGAGTTAAAGAAGATAAAGATTGGTCA 8374
Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975
| | | ||| || | | |||| || |||| ||||| | || ||||||||
Sbjct 8373 TTATTTTCTCCAAATGTTGCCAGTGGTTTAAGTGATTGTTATGGTGATGAATTTGAAGAA 8314
Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA--ATTCCAGCTCAAGAAC 111033
| ||||||| || |||||| ||||| | | || | | | || ||| || ||
Sbjct 8313 TTATACGAAAGATTTGAAAAGGAAGG--ATTAGCGGTATCTACTGTTAAAGCACATAAAT 8256
Query 111034 TTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAG 111093
| ||| | || | ||||||||| ||||||| || || ||||| || |||||||
Sbjct 8255 TATGGATGGCGATTTTGGAATCACAAATTGAAACAGGTGGGCCCTATATGTTATATAAAG 8196
Query 111094 AT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTG 111152
|| ||| ||| ||||||||||||| ||||||||||| || || || ||||||
Sbjct 8195 ATGCAT-GCAATTCAAAATCTAATCAAAAAAATTTAGGAACTATCAAATCATCTAATTTA 8137
Query 111153 TGCTGTG 111159
|| ||||
Sbjct 8136 TGTTGTG 8130
>seq259
Length=73057
Score = 150 bits (166), Expect = 4e-31
Identities = 223/317 (70%), Gaps = 5/317 (2%)
Strand=Plus/Minus
Query 167614 TTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAAC 167673
|||| || |||| | || | |||| ||| ||||| |||||| |||| || ||
Sbjct 43026 TTGCTGCTATAGGTAACGTATTAAAAGTATCAATGAATAATTTCCAAGTTTTGATATTAC 42967
Query 167674 CACGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGAT 167733
| |||||| |||||||| ||||| ||||| ||| | | || |||||||| ||||
Sbjct 42966 ATCTTCGTTTACATTCATCATAAAATCCATAAACTCGAGTAACATTTGCACATTCATGAT 42907
Query 167734 TTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAA 167793
||||||||||||||| | || | | || || |||||||| ||||
Sbjct 42906 TTCCTCTTAATAAAAAGAAATTTTCGGGATATTTGATTTTATAACATAATAATAATAAAA 42847
Query 167794 TTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTT 167853
| ||||||||||||| ||||||||||||||||||||| | ||||| ||| ||| |||
Sbjct 42846 TAGTTTCTAATGATTGTTTACCTCTATCAACATAATCACCAAGAAATAAATAATTAGTTT 42787
Query 167854 GGTTTGAAGGATTATCTA-GTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGT 167912
| | | ||| ||| | ||| | |||||| | ||||||| | ||||||||||
Sbjct 42786 G--TGGGGGGA--ATCCACATTTAGTGAAAATACGAATCAAATCACCATATTGACCATGA 42731
Query 167913 AAATCACCTACAACCTT 167929
| |||||| ||||| ||
Sbjct 42730 ACATCACCAACAACTTT 42714
>seq190
Length=159121
Score = 118 bits (130), Expect = 3e-21
Identities = 170/240 (71%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||||| ||| ||||| || |||| ||| | ||||| ||| | |||||||||||
Sbjct 120655 CATTTGATGGACGATGATCCAGTCTTGTTTAATCGTCAACCTTCATTACATAAAATGTCC 120714
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
|||||||| |||| ||| || || | | | || || |||| ||| | || |
Sbjct 120715 ATGATGGCACATAGAGTTAAGGTCATGCCATATTCCACCTTCAGATTGAATTTGTCTGTT 120774
Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488
| | || |||||||||||||| ||||| |||||||||||| | ||||| ||||||||
Sbjct 120775 ACTTCTCCATATAATGCGGATTTCGATGGTGATGAAATGAATTTACATGTCCCTCAATCT 120834
Query 305489 AAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCAAAACTTATCATTTCTCCT 305548
| |||| | |||||||| |||| ||| |||| || || || ||||||||
Sbjct 120835 CCAGAAACAAGATCAGAATTATCGCAAATTTGTGCTGTTCCATTACAAATTGTTTCTCCT 120894
Score = 89.7 bits (98), Expect = 1e-12
Identities = 167/243 (69%), Gaps = 8/243 (3%)
Strand=Plus/Minus
Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAG 72228
|||| ||||| ||||| ||||| ||||||||| || || || |||||| ||
Sbjct 117976 ACTTCCCCAAATACAACATGTTTACCATTTAAATGCGGAGTTGGGACAGTTGTAATAAAA 117917
Query 72229 AATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAA 72288
||||| || ||| | || ||||| | |||||||||||| | |||| || || |
Sbjct 117916 AATTGAGATCCATTGGTATTTGGACCAGCGTTAGCCATAGATAACAAAAATGGTTTATCA 117857
Query 72289 TGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTT 72348
|| ||||| || || ||||||||||| |||| ||||| || || ||| | |
Sbjct 117856 TGAGTTAATTGAAAGTTTTCATCTTCAAATTTTTCCCCATAAATTGATTCTCCTCCGATA 117797
Query 72349 CC--ATCAA--AGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATG 72404
|| ||| | ||| | |||||| |||||| |||||| ||||| ||||||||
Sbjct 117796 CCTGATCCATGAGT----GAAATCACCACCTTGACACATAAACCCTTTAATAACTCTATG 117741
Query 72405 GAA 72407
|||
Sbjct 117740 GAA 117738
>seq271
Length=63797
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 305286 AAATTAATGATATTGTTATCAGACAT-TTGAATGACAATGATTGGGTTCTGTTCAATAGG 305344
||||| ||||||| || | ||| ||||| || |||| ||| | ||||||||
Sbjct 54415 AAATTGGTGATATTCTTGAACGTCATATTGAA-GATGGTGATGTTGTTTTATTCAATAGA 54357
Query 305345 CAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG 305404
||||| ||| |||||| | | ||||| | | ||| | | ||| | || | |
Sbjct 54356 CAACCTTCATTGCATAGATTATCTATTTTATCCCATTATGCTAAAATCCGTCCTTGGAGG 54297
Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464
|| || |||| |||| | ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 54296 ACTTTCAGATTGAATGAATGTGTCTGTACGCCTTATAATGCCGATTTTGATGGGGATGAA 54237
Query 305465 ATGAATATGCATGTACCTCAA 305485
|||||| | ||||| || |||
Sbjct 54236 ATGAATTTACATGTTCCACAA 54216
>seq245
Length=85806
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/191 (72%), Gaps = 10/191 (5%)
Strand=Plus/Plus
Query 305301 TTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATA 305360
|||| |||||| | || |||| ||| || | | ||| | ||||| | | ||||
Sbjct 3243 TTAT-AGACATATAAAGAACAAGGATGTTGTCATTATGAATCGTCAACCTACTTTACATA 3301
Query 305361 AAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG---ATTGACATTTCGATTAA 305417
|| |||||||||| ||||||||||| ||| || |||| | ||||| |||||
Sbjct 3302 AAGCTTCTATGATGGGTCATAAAGTCAGAGTTTTGCCTGGTGAAAAAACATTAAGATTAC 3361
Query 305418 AT---GTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474
|| | || | || || | ||||||||| ||||| ||||| ||||||||||||||||
Sbjct 3362 ATTATGCAAATACTGGTGC---TTATAATGCTGATTTCGATGGTGATGAAATGAATATGC 3418
Query 305475 ATGTACCTCAA 305485
|| | ||||||
Sbjct 3419 ATTTCCCTCAA 3429
>seq35
Length=227830
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 167250 CCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGA 167309
||||||||||| || ||| ||| ||||| |||||||||| || || |||| |
Sbjct 60505 CCAGCATTATCAAACTCACCACAATAGTTTGGCGCTGAAAATAATGTTACCAATTGCCTT 60564
Query 167310 TTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
|| |||| |||||||||||||||||||| |||| |||||||||
Sbjct 60565 TTAGAAAAGAATTCATAACCATCTTCAACCACTTGATGGGCACG 60608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186808299012456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |