Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq46 306 9e-78 seq242 221 3e-52 seq259 150 4e-31 seq190 118 3e-21 seq271 98.7 2e-15 seq245 93.3 1e-13 seq35 89.7 1e-12 >seq46 Length=215403 Score = 306 bits (338), Expect = 9e-78 Identities = 605/887 (68%), Gaps = 9/887 (1%) Strand=Plus/Minus Query 110279 TTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTT 110338 |||| |||||| | | || | | ||||| |||||||| ||| | ||| | | ||||| Sbjct 193088 TTATGATCGTGATTTTAATTATAATTATTTCGGTTTCAAGACTTTGGAAAGATCCTATTT 193029 Query 110339 ACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGAT 110398 | | ||||| ||||| | | |||| | || ||||| | | | | ||||| || Sbjct 193028 ATTACGTGTTAATGGTAAAGTTGCTGAAAGACCACAACATTTAATCATGAGAGTTGCTAT 192969 Query 110399 TGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAA 110458 |||||||||||| |||||||| | |||||||||| |||| || || | |||| Sbjct 192968 TGGTATTCATGGTGATGATATTCCAAGAGTTATTGAATCTTATAATTTAATGTCCCAAAA 192909 Query 110459 GAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGC 110518 | || ||||| | |||| || ||||||| || || ||| |||| || | Sbjct 192908 ATATTTTACTCATGGTTCTCCAACTTTATTTAATGCTGGTACTCCAAACCCACAAATGTC 192849 Query 110519 TTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTA 110577 |||||| |||||| | | ||| || || ||||||||||| |||||||||||| || ||| Sbjct 192848 TTCTTG-TTTCTTAGTTGCAATGAAGGAAGATTCTATTGATGGTATTTATGATACT-TTA 192791 Query 110578 AAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATT 110636 |||| |||| | || || || | |||| || |||||| | || ||||| | ||| Sbjct 192790 AAGACTTGTGCTTTAATCTCAAAGAGTGCTGGTGGTATTGGTTTACATATTCATAACATT 192731 Query 110637 CGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATG 110696 || | | || || |||| || | || ||| |||| | || | |||| ||| Sbjct 192730 CGTGCCACTGGTGCTTATATTGCTGGTACTAATGGTACTTCCAACGGTATCATTCCTATG 192671 Query 110697 TTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGC 110753 | | ||||||||| | ||||| ||||| ||||||||||||| |||| || Sbjct 192670 GTCCGTGTCTTCAACAATACTGCTCGTTATGTTGATCAAGGTGGTAACAAGAGACCAGGT 192611 Query 110754 TCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGT 110813 | |||||| | ||| | ||||| |||||| | ||||| ||||| ||| | || || | Sbjct 192610 GCTTTTGCTCTTTATTTAGAACCATGGCATGCTGATATTTTTGATTTCATTGATATTAGA 192551 Query 110814 AAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCA 110873 || |||||||| |||||| |||||| | |||||||| || | |||||| || Sbjct 192550 AAGAATCAAGGTAAAGAAGAAATTAGAGCAAGAGATTTATTCCCAGCTTTATGGATTCCA 192491 Query 110874 GATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGT 110933 |||||||||||||| | ||| || |||| || ||| || | | | ||| || Sbjct 192490 GATTTATTCATGAAGAGAGTTGAACAAAACGGTGATTGGACTTTATTCTCTCCAAATGAA 192431 Query 110934 TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 |||| || || | ||||| || || | || ||||| | | || |||||||||||| Sbjct 192430 GCTCCAGGATTACCAGATGTTTACGGTGATGAATTTGAGCAATTATATGAAAAATATGAA 192371 Query 110994 AAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGA 111052 | ||| || | | | ||||| || ||||||| || | |||| || | || Sbjct 192370 AGAGAGGGTCGTGGTAGACAAAC-CGTTAAAGCTCAAAAATTATGGTATTCCATTTTAGA 192312 Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATC 111112 | | ||| ||||||||| ||||| | ||| || ||||||||| | |||| | ||||| Sbjct 192311 AGCTCAAACTGAAACTGGTACTCCATTTATGTTATATAAAGATGCTTGTAATAGAAAATC 192252 Query 111113 TAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||||| ||| || || | ||||| ||| ||||| || |||| Sbjct 192251 CAATCAAAAGAACTTGGGTATGATTAAATCTTCCAATTTATGTTGTG 192205 Score = 127 bits (140), Expect = 5e-24 Identities = 263/390 (67%), Gaps = 6/390 (2%) Strand=Plus/Minus Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 |||| |||||| || || |||||| ||| |||||| ||| ||| || ||| || Sbjct 149644 ATTAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCACAGACGATGAAGCCTTATTTGCT 149585 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 |||| | || || || ||| |||||||||||| ||||| ||| | ||| | Sbjct 149584 GAAAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTTCTTCAGTGGTTCATTCGCATCC 149525 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||||||| | |||||| | || || |||||||| | |||| ||||| |||| ||| Sbjct 149524 ATCTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTTAACATTCTCCAACGAATTAATC 149465 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCT 132031 | |||||||||| || |||||||| ||||| | ||||| ||| | || | Sbjct 149464 TGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTCT---CCCATTTGGAA 149408 Query 132032 GATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091 ||| || | || | | | |||| || | |||| || || |||| ||| || ||| Sbjct 149407 AATAGACCAGCTGCAGAAATTATTGAAAAGATTATTGTTGAGGCTGTTGCTATTGAAAAG 149348 Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151 || || | || || || || ||| | |||| | || ||||| | | | ||| Sbjct 149347 GAATTCTTCACTGATGCCTTACCTGTTAGTTTGTTAGGTATGAACTGTAAGTTAATGTGT 149288 Query 132152 GAGTACATTGAATTCGTTGCTGATCGTTTA 132181 | ||| ||||||| ||||||||| | ||| Sbjct 149287 CAATACGTTGAATTTGTTGCTGATAGATTA 149258 >seq242 Length=99814 Score = 221 bits (244), Expect = 3e-52 Identities = 600/907 (66%), Gaps = 21/907 (2%) Strand=Plus/Minus Query 110265 AATAATATTATCGATTATACTCGTGACTATGATATTGAC-TATTTTGGTTTCAAAACTCT 110323 |||||| | || ||| | |||| || | ||| ||| | ||||||||| | ||||| | Sbjct 9027 AATAATTTGATTGATAAATCTCGAGATTTTGA-ATTATCATATTTTGGTGTGAAAACATT 8969 Query 110324 TGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTT 110383 || | | |||||| | | ||||| || || |||| ||| ||| | || Sbjct 8968 AGAGAATTCATATTTATTAAAAATGAATGGAGAAATTGCTGAAATTCCCCAATTTTTATT 8909 Query 110384 TCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGA 110443 | | | || || || || |||||| ||||| | | | ||||| ||| ||||| Sbjct 8908 TTTAAGGGTAGCTATCGGAATTCATTTTAATGATTTAGATGAAGTTATGGAAACGTATGA 8849 Query 110444 TGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAA 110503 | || | || || | ||||| ||| | || || ||| || || |||| ||| Sbjct 8848 TTTAATGTCCAATAAATATTTCATTCACGCTTCACCAACATTATACAATGCCGGAAGTAA 8789 Query 110504 TGGAGGACAATTGGCTT----CTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAG 110559 | ||||| ||| | || ||| | || | || || ||||| || || || | Sbjct 8788 TTT----CAATTTCCTTTCTTCATGTTTTTTACTTGCTATGAAGGATGACTCAATAGATG 8733 Query 110560 GTATTTAT-GATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT 110618 | |||||| || || | | || || || | || || ||| || ||||| ||||| Sbjct 8732 GGATTTATAGAACCT-TGCATGAGACAGCATTGATATCAAAAGCATCAGGAGGGATTGGA 8674 Query 110619 ATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCA 110678 |||| || ||| |||| || || || ||| || |||||| | | || || |||| Sbjct 8673 GTTCATGTCCATAATATCCGATCCAACGGATCATTTATCGCTAGTACAAATGGGACTTCT 8614 Query 110679 ACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT 110738 | ||| | ||||||||||| ||||| || ||| | || |||| |||||| ||||||| Sbjct 8613 AACGGATTGGTTCCAATGTTGAGAGTATTTAACAATACGGCAAGATATGTTGATCAAGGA 8554 Query 110739 GGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTT 110795 ||| || | | || |||| || | ||| | |||||||||||| |||||||||| Sbjct 8553 GGTGGGAAACGTCCAGGAGCATTCGCGGTATATATTGAACCTTGGCATGGAGATATATTT 8494 Query 110796 GAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTT 110855 || | || ||| | | || ||||| || ||||||||| ||| | | ||||||||| Sbjct 8493 GATATTTTGGAAATGAGAAAGAATCATGGGAATGAAGAACATAGAACTAGAGATTTATTT 8434 Query 110856 TATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCT 110915 |||| | | ||||| | ||||| || ||||| | ||| ||||| || ||||| Sbjct 8433 TATGGATTATGGATACCTGATTTGTTTATGAAGAGAGTTAAAGAAGATAAAGATTGGTCA 8374 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 | | | ||| || | | |||| || |||| ||||| | || |||||||| Sbjct 8373 TTATTTTCTCCAAATGTTGCCAGTGGTTTAAGTGATTGTTATGGTGATGAATTTGAAGAA 8314 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA--ATTCCAGCTCAAGAAC 111033 | ||||||| || |||||| ||||| | | || | | | || ||| || || Sbjct 8313 TTATACGAAAGATTTGAAAAGGAAGG--ATTAGCGGTATCTACTGTTAAAGCACATAAAT 8256 Query 111034 TTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAG 111093 | ||| | || | ||||||||| ||||||| || || ||||| || ||||||| Sbjct 8255 TATGGATGGCGATTTTGGAATCACAAATTGAAACAGGTGGGCCCTATATGTTATATAAAG 8196 Query 111094 AT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTG 111152 || ||| ||| ||||||||||||| ||||||||||| || || || |||||| Sbjct 8195 ATGCAT-GCAATTCAAAATCTAATCAAAAAAATTTAGGAACTATCAAATCATCTAATTTA 8137 Query 111153 TGCTGTG 111159 || |||| Sbjct 8136 TGTTGTG 8130 >seq259 Length=73057 Score = 150 bits (166), Expect = 4e-31 Identities = 223/317 (70%), Gaps = 5/317 (2%) Strand=Plus/Minus Query 167614 TTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAAC 167673 |||| || |||| | || | |||| ||| ||||| |||||| |||| || || Sbjct 43026 TTGCTGCTATAGGTAACGTATTAAAAGTATCAATGAATAATTTCCAAGTTTTGATATTAC 42967 Query 167674 CACGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGAT 167733 | |||||| |||||||| ||||| ||||| ||| | | || |||||||| |||| Sbjct 42966 ATCTTCGTTTACATTCATCATAAAATCCATAAACTCGAGTAACATTTGCACATTCATGAT 42907 Query 167734 TTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAA 167793 ||||||||||||||| | || | | || || |||||||| |||| Sbjct 42906 TTCCTCTTAATAAAAAGAAATTTTCGGGATATTTGATTTTATAACATAATAATAATAAAA 42847 Query 167794 TTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTT 167853 | ||||||||||||| ||||||||||||||||||||| | ||||| ||| ||| ||| Sbjct 42846 TAGTTTCTAATGATTGTTTACCTCTATCAACATAATCACCAAGAAATAAATAATTAGTTT 42787 Query 167854 GGTTTGAAGGATTATCTA-GTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGT 167912 | | | ||| ||| | ||| | |||||| | ||||||| | |||||||||| Sbjct 42786 G--TGGGGGGA--ATCCACATTTAGTGAAAATACGAATCAAATCACCATATTGACCATGA 42731 Query 167913 AAATCACCTACAACCTT 167929 | |||||| ||||| || Sbjct 42730 ACATCACCAACAACTTT 42714 >seq190 Length=159121 Score = 118 bits (130), Expect = 3e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| ||| ||||| || |||| ||| | ||||| ||| | ||||||||||| Sbjct 120655 CATTTGATGGACGATGATCCAGTCTTGTTTAATCGTCAACCTTCATTACATAAAATGTCC 120714 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 |||||||| |||| ||| || || | | | || || |||| ||| | || | Sbjct 120715 ATGATGGCACATAGAGTTAAGGTCATGCCATATTCCACCTTCAGATTGAATTTGTCTGTT 120774 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | | || |||||||||||||| ||||| |||||||||||| | ||||| |||||||| Sbjct 120775 ACTTCTCCATATAATGCGGATTTCGATGGTGATGAAATGAATTTACATGTCCCTCAATCT 120834 Query 305489 AAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCAAAACTTATCATTTCTCCT 305548 | |||| | |||||||| |||| ||| |||| || || || |||||||| Sbjct 120835 CCAGAAACAAGATCAGAATTATCGCAAATTTGTGCTGTTCCATTACAAATTGTTTCTCCT 120894 Score = 89.7 bits (98), Expect = 1e-12 Identities = 167/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAG 72228 |||| ||||| ||||| ||||| ||||||||| || || || |||||| || Sbjct 117976 ACTTCCCCAAATACAACATGTTTACCATTTAAATGCGGAGTTGGGACAGTTGTAATAAAA 117917 Query 72229 AATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAA 72288 ||||| || ||| | || ||||| | |||||||||||| | |||| || || | Sbjct 117916 AATTGAGATCCATTGGTATTTGGACCAGCGTTAGCCATAGATAACAAAAATGGTTTATCA 117857 Query 72289 TGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTT 72348 || ||||| || || ||||||||||| |||| ||||| || || ||| | | Sbjct 117856 TGAGTTAATTGAAAGTTTTCATCTTCAAATTTTTCCCCATAAATTGATTCTCCTCCGATA 117797 Query 72349 CC--ATCAA--AGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATG 72404 || ||| | ||| | |||||| |||||| |||||| ||||| |||||||| Sbjct 117796 CCTGATCCATGAGT----GAAATCACCACCTTGACACATAAACCCTTTAATAACTCTATG 117741 Query 72405 GAA 72407 ||| Sbjct 117740 GAA 117738 >seq271 Length=63797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 305286 AAATTAATGATATTGTTATCAGACAT-TTGAATGACAATGATTGGGTTCTGTTCAATAGG 305344 ||||| ||||||| || | ||| ||||| || |||| ||| | |||||||| Sbjct 54415 AAATTGGTGATATTCTTGAACGTCATATTGAA-GATGGTGATGTTGTTTTATTCAATAGA 54357 Query 305345 CAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG 305404 ||||| ||| |||||| | | ||||| | | ||| | | ||| | || | | Sbjct 54356 CAACCTTCATTGCATAGATTATCTATTTTATCCCATTATGCTAAAATCCGTCCTTGGAGG 54297 Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || || |||| |||| | ||| ||||||||||||||||| ||||||||||| |||||| Sbjct 54296 ACTTTCAGATTGAATGAATGTGTCTGTACGCCTTATAATGCCGATTTTGATGGGGATGAA 54237 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | ||||| || ||| Sbjct 54236 ATGAATTTACATGTTCCACAA 54216 >seq245 Length=85806 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 305301 TTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATA 305360 |||| |||||| | || |||| ||| || | | ||| | ||||| | | |||| Sbjct 3243 TTAT-AGACATATAAAGAACAAGGATGTTGTCATTATGAATCGTCAACCTACTTTACATA 3301 Query 305361 AAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG---ATTGACATTTCGATTAA 305417 || |||||||||| ||||||||||| ||| || |||| | ||||| ||||| Sbjct 3302 AAGCTTCTATGATGGGTCATAAAGTCAGAGTTTTGCCTGGTGAAAAAACATTAAGATTAC 3361 Query 305418 AT---GTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474 || | || | || || | ||||||||| ||||| ||||| |||||||||||||||| Sbjct 3362 ATTATGCAAATACTGGTGC---TTATAATGCTGATTTCGATGGTGATGAAATGAATATGC 3418 Query 305475 ATGTACCTCAA 305485 || | |||||| Sbjct 3419 ATTTCCCTCAA 3429 >seq35 Length=227830 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 167250 CCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGA 167309 ||||||||||| || ||| ||| ||||| |||||||||| || || |||| | Sbjct 60505 CCAGCATTATCAAACTCACCACAATAGTTTGGCGCTGAAAATAATGTTACCAATTGCCTT 60564 Query 167310 TTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || |||| |||||||||||||||||||| |||| ||||||||| Sbjct 60565 TTAGAAAAGAATTCATAACCATCTTCAACCACTTGATGGGCACG 60608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808299012456