Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq253 136 4e-27 seq254 125 7e-24 seq46 86.0 6e-12 >seq253 Length=293773 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || || || | |||| || ||||||||||| ||||||||||| | Sbjct 106532 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106591 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| || || || || ||||| || ||||| || || Sbjct 106592 AAAGTTCTACCA-TCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGG 106650 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| |||||| || | ||||| || ||||| || Sbjct 106651 GATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAAC 106710 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||||| || ||||||||||||||||||||||| ||||||||| Sbjct 106711 TTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATT 106759 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || ||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| || || || || ||||| || || || || || Sbjct 106136 AAAGTTCTACCA-TCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGG 106194 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| ||| || || | ||||| || ||||| || Sbjct 106195 AATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106254 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||| ||||| ||||| || |||||||| |||||||| Sbjct 106255 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || || || | |||| || ||||||||||| ||||||||||| | Sbjct 106304 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106363 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| || || || || ||||| || ||||| || || Sbjct 106364 AAAGTTCTACCA-TCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGG 106422 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| ||| || || | ||||| || ||||| || Sbjct 106423 GATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106482 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||| ||||| ||||| || |||||||| |||||||| Sbjct 106483 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 >seq254 Length=76587 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || || || | ||||| || ||||||||||| ||||||||||| | Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | || || || ||||| || || | || ||||| || || Sbjct 42974 AAAGTTCTACCA-TCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 43032 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || |||||| ||| | |||||||| ||||| || Sbjct 43033 AATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGAC 43092 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | |||||||| ||||| ||||| || || ||||||||||||||||| Sbjct 43093 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 >seq46 Length=215403 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 21443 TTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAAGGATTGC 21502 |||| ||||| || || || || ||| || |||||||| ||| |||| ||| ||||| Sbjct 149161 TTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATTAG 149220 Query 21503 TGGCGTAAAAACACCTTTCTTCGTTC--AATTCCACGCACAAACGATCCGCCACGAATTC 21560 || | | || ||||| ||| | | ||| | || | || | ||| || || ||||| Sbjct 149221 TGACATTGTAA-ACCTT-CTTATTACCAAATGCTACTAATAATCTATCAGCAACAAATTC 149278 Query 21561 AATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGACCGGTAGCGCTTCGGT 21620 || |||||||||||| | || ||||| || |||| | || |||| || || || Sbjct 149279 AACGTATTGACACATTAACTTACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGT 149338 Query 21621 GAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 ||| || ||||| || ||||| || || || Sbjct 149339 GAAGAATTCCTTTTCAATAGCAACAGCCTC 149368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396530025920