Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq253 136 4e-27
seq254 125 7e-24
seq46 86.0 6e-12
>seq253
Length=293773
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || || || | |||| || ||||||||||| ||||||||||| |
Sbjct 106532 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106591
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| | | | | || || | ||||| || || || || ||||| || ||||| || ||
Sbjct 106592 AAAGTTCTACCA-TCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGG 106650
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || ||||||||||| |||||| || | ||||| || ||||| ||
Sbjct 106651 GATACCTTCCTTATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAAC 106710
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| | ||||| || ||||||||||||||||||||||| |||||||||
Sbjct 106711 TTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATT 106759
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || ||| || | ||| | || ||||||||||| ||||||||||| |
Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| | | | | || || | ||||| || || || || ||||| || || || || ||
Sbjct 106136 AAAGTTCTACCA-TCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGG 106194
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || ||||||||||| ||| || || | ||||| || ||||| ||
Sbjct 106195 AATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106254
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | ||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 106255 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || || || | |||| || ||||||||||| ||||||||||| |
Sbjct 106304 CCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106363
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| | | | | || || | ||||| || || || || ||||| || ||||| || ||
Sbjct 106364 AAAGTTCTACCA-TCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGG 106422
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || ||||||||||| ||| || || | ||||| || ||||| ||
Sbjct 106423 GATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAAC 106482
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | ||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 106483 TTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530
>seq254
Length=76587
Score = 125 bits (138), Expect = 7e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || || || | ||||| || ||||||||||| ||||||||||| |
Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| | | | | || || | || || || ||||| || || | || ||||| || ||
Sbjct 42974 AAAGTTCTACCA-TCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 43032
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || ||||| || || |||||| ||| | |||||||| ||||| ||
Sbjct 43033 AATACCTTCCTTATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGAC 43092
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|| | |||||||| ||||| ||||| || || |||||||||||||||||
Sbjct 43093 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143
>seq46
Length=215403
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 21443 TTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAAGGATTGC 21502
|||| ||||| || || || || ||| || |||||||| ||| |||| ||| |||||
Sbjct 149161 TTTCGAAGAAGTTGGTCTTACCAGCTAATGAAATGTTTTCCATGAAATCAAATGGATTAG 149220
Query 21503 TGGCGTAAAAACACCTTTCTTCGTTC--AATTCCACGCACAAACGATCCGCCACGAATTC 21560
|| | | || ||||| ||| | | ||| | || | || | ||| || || |||||
Sbjct 149221 TGACATTGTAA-ACCTT-CTTATTACCAAATGCTACTAATAATCTATCAGCAACAAATTC 149278
Query 21561 AATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGACCGGTAGCGCTTCGGT 21620
|| |||||||||||| | || ||||| || |||| | || |||| || || ||
Sbjct 149279 AACGTATTGACACATTAACTTACAGTTCATACCTAACAAACTAACAGGTAAGGCATCAGT 149338
Query 21621 GAAAAACTCCTTCTCGATAGCCACCGCTTC 21650
||| || ||||| || ||||| || || ||
Sbjct 149339 GAAGAATTCCTTTTCAATAGCAACAGCCTC 149368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505396530025920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |