Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq46 215 4e-51
seq74 172 4e-38
seq276 96.9 3e-15
>seq46
Length=215403
Score = 215 bits (238), Expect = 4e-51
Identities = 592/890 (67%), Gaps = 33/890 (4%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| |||| |||||| || ||||| || |||||| | |||||||| || | ||
Sbjct 150016 TTTGTCATGTTCCCAATTAGATTCCATGAAATTTGGCAATTTTACAAAAAGGCTGAAGCT 149957
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGAT---TGCA 43816
|| || ||||| || |||||| | ||||| | |||||| ||| |||||| | |
Sbjct 149956 TCTTTCTGGACTGCCGAAGAAATCGATTTAAGTAAAGATTTAAACGATTGGAGAAATAAA 149897
Query 43817 TTAAA--ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874
||||| || || ||| || || ||| | | ||||| |||||||| |
Sbjct 149896 TTAAATGACGAC--GAACGTTTCTTCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAG 149839
Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934
| || || || ||||||||||||||| || | ||||||||| | |||||||
Sbjct 149838 ATGGTATCGTTAATGAAAATTTGGTTGAAAACTTCTCAGCTGAAGTTCAAATTCCAGAAG 149779
Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994
| | || ||||| || ||||| || ||||| |||||||| |||| || |
Sbjct 149778 CCAAGTCCTTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAACTTATTCCC 149719
Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA----TTGTTTAATGCG 44050
|| | || || || || ||||| ||| || ||||| ||| ||||| |||||
Sbjct 149718 TTTTAATCGACACTTATATCAAGGATC--CAAAGGAAGC--CGACTATTTGTTCAATGCT 149663
Query 44051 ATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109
|| || | | | | || |||| | | || || |||||||| |||| |||||| | |
Sbjct 149662 ATTGACCATATTCCATGT-ATTAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCA---C 149607
Query 44110 AAATGATT----CTT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163
| | ||| ||| ||| ||| || | || || || || | ||| ||||| |||||
Sbjct 149606 AGACGATGAAGCCTTATTTGCTGAAAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTT 149547
Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223
||| || || || || |||| |||||||||||||| ||||||| |||||||| ||
Sbjct 149546 CTTCAGTGGTTCATTCGCATCCATCTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTT 149487
Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
|| || || || || ||||| || | |||||||| |||||| ||||||||||| ||
Sbjct 149486 AACATTCTCCAACGAATTAATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTT 149427
Query 44284 GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGACAATTACAGATATTGTTG 44342
||| | || | ||| | ||| || | || | | | ||| | | ||| |||
Sbjct 149426 ATTATTCTCCCAT-TTGGAAA--ATAGACCAGC-TGCAGAAATTATTGAAAAGATTATTG 149371
Query 44343 TAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAG 44402
| ||||| || || ||| | ||||| | || || |||||||| | ||| |||
Sbjct 149370 TTGAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCCTTACCTGTTAGTTTGTTAG 149311
Query 44403 GAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTG 44461
| ||||| || | || ||| ||||| |||||| |||| ||| | ||| | |
Sbjct 149310 GTATGAACTGTA-AGTTAATGTGTCAATACGTTGAATTTGTTGCTGATAGATTATTAGTA 149252
Query 44462 GAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATT 44521
| | | ||| | || || | ||| || || |||||||| |||||||| |||
Sbjct 149251 GCATTTGGTAATAAGAAGGTTTACAATGTCACTAATCCATTTGATTTCATGGAAAACATT 149192
Query 44522 TCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571
|| || | || || || ||||| || ||||| | ||| || |||||
Sbjct 149191 TCATTAGCTGGTAAGACCAACTTCTTCGAAAAGAGAGTTTCTGATTATCA 149142
>seq74
Length=12437
Score = 172 bits (190), Expect = 4e-38
Identities = 291/419 (69%), Gaps = 23/419 (5%)
Strand=Plus/Minus
Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTAC--- 19418
||| || || ||| ||| || || |||||||| | || | |||| | ||||
Sbjct 10806 TGGACCTCCAGGTACTGGTAAGACTTTAATTGCCCGTAAATTATCTAAAATGCTTAATGG 10747
Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478
|||| |||| || ||||| |||||||||||||| |||| ||| ||||| ||| |||
Sbjct 10746 AAAAGAACCG---AAGATTGTTAATGGTCCTGAAATGTTAAGTAAGTATGTTGGTGCATC 10690
Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538
||||||||| | || ||| || || || |||| |||| | |||| |||
Sbjct 10689 AGAAGAAAATATTCGTAATTTATTCAAGGATGCAGAAGCAGAATATAAACAAAAAGG--- 10633
Query 19539 CAAAAGT-TCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594
| ||| ||| ||||| |||| || | ||||||||||| | | | ||||||||
Sbjct 10632 -AGAAGACTCTGATTTGCATGTTATTATCTTTGATGAATTGGATTCGGTGTTTAAGCAAA 10574
Query 19595 GAGGTTCTGG---------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645
|||| ||||| || | ||| || ||| | |||||| |||||| | | |
Sbjct 10573 GAGGGTCTGGAAAATCCGATGGTACTGGTGTTGGTGATAATGTTGTTAATCAATTATTAT 10514
Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705
|||| | || |||||| |||| ||||||||||||| |||||||| ||||||||| |
Sbjct 10513 CAAAGATGGATGGTGTTGACCAGTTGAATAATATTTTGGTTATTGGTATGACTAATCGTT 10454
Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764
|||| ||||| || | || |||||| |||| ||| | || ||||| | || ||||||
Sbjct 10453 TGGATTTAATTGATACTGCTTTATTAAGACCAGGTAGATTTGAAATTCAAATTGAAATT 10395
>seq276
Length=61907
Score = 96.9 bits (106), Expect = 3e-15
Identities = 165/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921
|||||||||| | ||||| |||||||| || || | | |||||||||| || ||||||
Sbjct 8850 TGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATATGT 8791
Query 40922 CACTATGTACT-CTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980
| ||| | ||||||||||| | ||||| ||||||||||| |||||| | |
Sbjct 8790 GGAT-TGTGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGATGTTATAAAGA 8732
Query 40981 CGATTAAATCCG-ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039
|||||| || |||| || || | || || ||| || ||||||||| | ||
Sbjct 8731 -AATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGAT 8673
Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093
| | |||||| | ||||| |||||| | || ||||| ||||| ||| ||
Sbjct 8672 TTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTGTCAATTTTATGTTAGC 8619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454566177480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |