Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq46 215 4e-51 seq74 172 4e-38 seq276 96.9 3e-15 >seq46 Length=215403 Score = 215 bits (238), Expect = 4e-51 Identities = 592/890 (67%), Gaps = 33/890 (4%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| |||| |||||| || ||||| || |||||| | |||||||| || | || Sbjct 150016 TTTGTCATGTTCCCAATTAGATTCCATGAAATTTGGCAATTTTACAAAAAGGCTGAAGCT 149957 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGAT---TGCA 43816 || || ||||| || |||||| | ||||| | |||||| ||| |||||| | | Sbjct 149956 TCTTTCTGGACTGCCGAAGAAATCGATTTAAGTAAAGATTTAAACGATTGGAGAAATAAA 149897 Query 43817 TTAAA--ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 ||||| || || ||| || || ||| | | ||||| |||||||| | Sbjct 149896 TTAAATGACGAC--GAACGTTTCTTCATTTCTAGAATCCTTGCGTTCTTTGCTGCTTCAG 149839 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || ||||||||||||||| || | ||||||||| | ||||||| Sbjct 149838 ATGGTATCGTTAATGAAAATTTGGTTGAAAACTTCTCAGCTGAAGTTCAAATTCCAGAAG 149779 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | | || ||||| || ||||| || ||||| |||||||| |||| || | Sbjct 149778 CCAAGTCCTTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAACTTATTCCC 149719 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA----TTGTTTAATGCG 44050 || | || || || || ||||| ||| || ||||| ||| ||||| ||||| Sbjct 149718 TTTTAATCGACACTTATATCAAGGATC--CAAAGGAAGC--CGACTATTTGTTCAATGCT 149663 Query 44051 ATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109 || || | | | | || |||| | | || || |||||||| |||| |||||| | | Sbjct 149662 ATTGACCATATTCCATGT-ATTAGAAAGAAGGCTGACTGGGCTCTTAGATGGATCA---C 149607 Query 44110 AAATGATT----CTT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 | | ||| ||| ||| ||| || | || || || || | ||| ||||| ||||| Sbjct 149606 AGACGATGAAGCCTTATTTGCTGAAAGATTAGTTGCATTCGCTGCTGTTGAAGGTATTTT 149547 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||| || || || || |||| |||||||||||||| ||||||| |||||||| || Sbjct 149546 CTTCAGTGGTTCATTCGCATCCATCTTTTGGTTAAAGAAGAGAGGTTTAATGCCTGGTTT 149487 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 || || || || || ||||| || | |||||||| |||||| ||||||||||| || Sbjct 149486 AACATTCTCCAACGAATTAATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTT 149427 Query 44284 GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGACAATTACAGATATTGTTG 44342 ||| | || | ||| | ||| || | || | | | ||| | | ||| ||| Sbjct 149426 ATTATTCTCCCAT-TTGGAAA--ATAGACCAGC-TGCAGAAATTATTGAAAAGATTATTG 149371 Query 44343 TAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAG 44402 | ||||| || || ||| | ||||| | || || |||||||| | ||| ||| Sbjct 149370 TTGAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCCTTACCTGTTAGTTTGTTAG 149311 Query 44403 GAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTG 44461 | ||||| || | || ||| ||||| |||||| |||| ||| | ||| | | Sbjct 149310 GTATGAACTGTA-AGTTAATGTGTCAATACGTTGAATTTGTTGCTGATAGATTATTAGTA 149252 Query 44462 GAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATT 44521 | | | ||| | || || | ||| || || |||||||| |||||||| ||| Sbjct 149251 GCATTTGGTAATAAGAAGGTTTACAATGTCACTAATCCATTTGATTTCATGGAAAACATT 149192 Query 44522 TCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || | || || || ||||| || ||||| | ||| || ||||| Sbjct 149191 TCATTAGCTGGTAAGACCAACTTCTTCGAAAAGAGAGTTTCTGATTATCA 149142 >seq74 Length=12437 Score = 172 bits (190), Expect = 4e-38 Identities = 291/419 (69%), Gaps = 23/419 (5%) Strand=Plus/Minus Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTAC--- 19418 ||| || || ||| ||| || || |||||||| | || | |||| | |||| Sbjct 10806 TGGACCTCCAGGTACTGGTAAGACTTTAATTGCCCGTAAATTATCTAAAATGCTTAATGG 10747 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 |||| |||| || ||||| |||||||||||||| |||| ||| ||||| ||| ||| Sbjct 10746 AAAAGAACCG---AAGATTGTTAATGGTCCTGAAATGTTAAGTAAGTATGTTGGTGCATC 10690 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 ||||||||| | || ||| || || || |||| |||| | |||| ||| Sbjct 10689 AGAAGAAAATATTCGTAATTTATTCAAGGATGCAGAAGCAGAATATAAACAAAAAGG--- 10633 Query 19539 CAAAAGT-TCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | ||| ||| ||||| |||| || | ||||||||||| | | | |||||||| Sbjct 10632 -AGAAGACTCTGATTTGCATGTTATTATCTTTGATGAATTGGATTCGGTGTTTAAGCAAA 10574 Query 19595 GAGGTTCTGG---------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 |||| ||||| || | ||| || ||| | |||||| |||||| | | | Sbjct 10573 GAGGGTCTGGAAAATCCGATGGTACTGGTGTTGGTGATAATGTTGTTAATCAATTATTAT 10514 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 |||| | || |||||| |||| ||||||||||||| |||||||| ||||||||| | Sbjct 10513 CAAAGATGGATGGTGTTGACCAGTTGAATAATATTTTGGTTATTGGTATGACTAATCGTT 10454 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 |||| ||||| || | || |||||| |||| ||| | || ||||| | || |||||| Sbjct 10453 TGGATTTAATTGATACTGCTTTATTAAGACCAGGTAGATTTGAAATTCAAATTGAAATT 10395 >seq276 Length=61907 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921 |||||||||| | ||||| |||||||| || || | | |||||||||| || |||||| Sbjct 8850 TGAAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATATGT 8791 Query 40922 CACTATGTACT-CTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 | ||| | ||||||||||| | ||||| ||||||||||| |||||| | | Sbjct 8790 GGAT-TGTGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGATGTTATAAAGA 8732 Query 40981 CGATTAAATCCG-ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 |||||| || |||| || || | || || ||| || ||||||||| | || Sbjct 8731 -AATTAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGAT 8673 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | | |||||| | ||||| |||||| | || ||||| ||||| ||| || Sbjct 8672 TTTGCTAAAATGGCACTCCCACCATGTCATGTCTTTTGTCAATTTTATGTTAGC 8619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454566177480