Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq253 107 2e-18 seq242 104 2e-17 >seq253 Length=293773 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||||||||| ||||| || ||||| || |||||||| | | | ||| | | || Sbjct 106547 AAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CATC 106605 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | |||||||| ||| | || | ||| |||||||| || || | ||| || ||||| Sbjct 106606 TTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATC 106665 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | | | || | ||||| | | ||||||||||| || |||| Sbjct 106666 TTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGT 106725 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || | |||||| || ||||||||||| Sbjct 106726 CTTACCGGTTAAAGTTTTAACGAAGATTTGCAT 106758 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||||||||| ||||| || ||||| || |||||||| | | | ||| | | || Sbjct 106319 AAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CATC 106377 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | |||||||| ||| | || | ||| |||||||| || || | ||| || ||||| Sbjct 106378 TTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATC 106437 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | | | || | |||||| | | ||||||||||| ||| || | Sbjct 106438 TTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGT 106497 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || | || || || |||||||||||| Sbjct 106498 CTTACCAGTTAAGGTCTTAACGAAGATTTGCATA 106531 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 27016 TATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAG 27074 ||||| || || | || | ||| || || || || ||||| || ||||| || |||||| Sbjct 106070 TATTGACCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAG 106129 Query 27075 TC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 || | | | ||| | | ||||| | |||||||| ||| | || | ||| ||||| || Sbjct 106130 TCAGATAAAGTTCTAC-CATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTC 106188 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | ||| || ||||| || || ||| | | | || | |||||| | | Sbjct 106189 AGGTGGAATACCTTCCTTATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGA 106248 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||||||| ||| || | || || || | || || || |||||||||||| Sbjct 106249 TTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCATA 106303 >seq242 Length=99814 Score = 104 bits (114), Expect = 2e-17 Identities = 202/295 (68%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 || ||||| ||||||||||||||| || | |||||| | || || | |||||||| | | Sbjct 8392 TTTAACTCTCTTCATAAACAAATCAGGTATCCATAATCCATAAAATAAATCTCTAGTTCT 8451 Query 131704 TTTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762 | ||||| | ||||| ||| ||| ||| | |||| || || || || |||||| Sbjct 8452 ATGTTCTTC-ATTCCCATGATTCTTTCTCATTTCCAAAATATCAAATATATCTCCATGCC 8510 Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGAC 131819 | ||||| | ||| || || | ||| ||| || || ||| ||||||| ||||| | Sbjct 8511 AAGGTTCAATATATACCGCGAATGCTCCTGGACGTTTCCCACCTCCTTGATCAACATATC 8570 Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGC 131879 || | ||||| |||| | |||||| || |||| ||||| | | ||||| || | Sbjct 8571 TTGCCGTATTGTTAAATACTCTCAACATTGGAACCAATCCGTTAGAAGTCCCATTTGTAC 8630 Query 131880 TCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 | || | || |||| || ||| || || || | | |||||| ||||| Sbjct 8631 TAGCGATAAATGATCCGTTGGATCGGATATTATGGACATGAACTCCAATCCCTCC 8685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932867049152