Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq46 206 3e-48 seq217 111 2e-19 >seq46 Length=215403 Score = 206 bits (228), Expect = 3e-48 Identities = 825/1291 (64%), Gaps = 17/1291 (1%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 ||||||| || ||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 191603 TCTTCTCGAATAAATGTTTGAAGTATATGGTTCAAAACATTCATTATTACCCAAGATTTG 191662 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 | || || || |||||||| || || | ||||||| || | | ||| | | Sbjct 191663 GGAAGTAGAAGCAGTTGGCATAGGAGCAACCAAAAGAGAATTTCTTAAACCATGTTTGGC 191722 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATG 110875 || || || | |||||| || || || || | | |||| | ||| | Sbjct 191723 CATATTTTGTTTTAATGTATCCCAATCCCATAATTCAGTTGGCTTTCTATT--CCATAAA 191780 Query 110876 TCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG 110935 ||||| || | | ||||| || || || ||||| | | |||| || | ||||| Sbjct 191781 TCAAATTGTAATAATCCTTGCGAAGCTGGGGAACCTTGGTATGTTTGGTATGCACCTTCT 191840 Query 110936 GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| ||| |||||| | || | | ||| ||||| ||||||||||| || || Sbjct 191841 TCTTGAGCTAATTCAATAGAAGTTTCAACAGCTGCATGATAAATGGTTTCAAAAATTTGA 191900 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCC 111055 || | || | ||||| | |||||||||| | | | || || ||| Sbjct 191901 ATGTTTAATTCTCTAGCTTCTTGAGAATCAAATGGTAATCTTAAGGCCATGAAGGAATCG 191960 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || | |||||||||||| ||| |||| ||||| | ||| || || | || || Sbjct 191961 GCTAAACCTTGAACACCTAAAGCAATTGGTCTATTCTTCATGTTGGAAGTCTTAGCT-TC 192019 Query 111116 TC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 | ||| |||||| | || | ||||||||| |||| ||| ||||||| |||||| Sbjct 192020 TGGAACTGGATAATAGTTACGATCAATGACTTTATTTAAATTACGAGTAACAACCTTTGT 192079 Query 111175 GATTTCATGAAGTTTTTCATAAT-----CAAAAGTGCGAGTC-TCTTCATTGACATACTT 111228 || |||||| | |||||| ||| ||| | || || |||| | ||| | Sbjct 192080 GACTTCATGTAATTTTTCGAAATTATACCAAGAATGATCATCATCTTTTTCAACAAATGA 192139 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| | || ||||| || |||||||||||||| || || | || || | Sbjct 192140 TGGTAAAGCAATTGAAGCTAAATTGCAAACAGCAACTTCTTCTGGGGAAGAATATTCAAC 192199 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 |||||| |||||| |||||| |||||| | ||||| |||||||| || || | Sbjct 192200 AATTTCACAACATAAATTGGAAGATTTAATCATACCCAAGTTCTTTTGATTGGATTTTCT 192259 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 || || ||||| || || | ||| | || || || || || || || | || | ||| Sbjct 192260 ATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGAGCTTCTAAAAT 192319 Query 111409 AGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 | | ||| | | ||| || | | | || ||||| || || || Sbjct 192320 GGAATACCATAATTTTTGAGCTTTAACGGTTTGTCTACCACGACCCTCTCTTTCATATTT 192379 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 | || | ||||| || ||||| | || | | ||||| || | | ||| Sbjct 192380 TTCATATAATTGCTCAAATTCATCACCGTAAACATCTGGTAATCCTGGAGCTTCATTTGG 192439 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | |||| | || ||| | ||| || ||||| | ||||||||| | ||||||||||| Sbjct 192440 AGAGAATAAAGTCCAATCACCGTTTTGTTCAACTCTCTTCATGAATAAATCTGGAATCCA 192499 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 | | || || | |||||| | | ||||| | |||||| || || | || Sbjct 192500 TAAAGCTGGGAATAAATCTCTTGCTCTAATTTCTTCTTTACCTTGATTCTTTCTAATATC 192559 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CT 111704 || ||| || | ||||| || |||||||| || | ||| | || | || || || Sbjct 192560 AATGAAATCAAAAATATCAGCATGCCATGGTTCTAAATAAAGAGCAAAAGCACCTGGTCT 192619 Query 111705 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | | || | |||||| ||||| || || || ||| || || || | ||| |||| Sbjct 192620 CTTGTTACC-ACCTTGATCAACATAACGAGCAGTATTGTTGAAGACACGGACCATAGGAA 192678 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCAT 111824 | ||||| | || |||||| || || |||| || | |||| | | | || Sbjct 192679 TGATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCACCAGTGGCACGAATGTTAT 192738 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | || || | |||||||| ||||| | |||||||||| ||||| | | | ||| Sbjct 192739 GAATATGTAAACCAATACCACCAGCACTCTTTGAGATTAAAGCACAAGTCTTTAAAGTAT 192798 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 |||| ||||| | || || || ||||| | || | | ||| ||| ||||| || | Sbjct 192799 CATAAATACCATCAATAGAATCTTCCTTCATTGCAACTAAGAAACAAGAAGACATTTGTG 192858 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGG 111975 | |||| ||||||||||| || | ||||| Sbjct 192859 GGTTTGGAGTACCAGCATTAAATAAAGTTGG 192889 >seq217 Length=263222 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 |||||||||||||| || || || || | ||||| |||||||||||| |||||| Sbjct 144244 TATGGTCGTGTTGCTCCTCGTTCTGGATTAGCTGTTAAGCATGGTATTTCTACTGGTGCT 144303 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 |||||||||||| | || |||| ||||||||| || || ||| | || ||||| ||| Sbjct 144304 GGTGTTATTGATGCTGATTATAGAGGTGAAGTTAAGGTTGTTTTATTTAATCATTCAGAT 144363 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAA 164762 || || ||||| || ||| || ||| | || |||||| Sbjct 144364 AAGGATTTTGAAGTTAAGGCTGGTGATAGAATTGCACAA 144402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029676281600