Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq253 132 5e-26 seq254 109 6e-19 >seq253 Length=293773 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| |||||| | || ||||| || | Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || |||||||||| || ||||| || ||||| || ||||| Sbjct 106242 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATTCCACCTGACCAA 106183 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| || |||||||| ||| | || |||| | | || || | ||||| || Sbjct 106182 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106123 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 ||||||||||||| || | || |||||||| | | | ||||| ||| Sbjct 106122 ATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGGTCAA 106072 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||||||||| || || || | ||||| ||||||||||| | || ||||| || Sbjct 106762 TACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAATC 106703 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 ||| | ||||| || | || |||||||||| || ||||| || || || || || Sbjct 106702 TTCTGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGA 106643 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || ||| |||| || |||||||| ||| | || |||| | | || || | ||||| Sbjct 106642 TCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTA 106583 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 || ||||||||||||| ||| | ||| | || || Sbjct 106582 CAACATCCAAAAGGAATCTACTTTACATTTGGTTTT 106547 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| |||||| | || ||||| || | Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || |||||||||| || ||||| || || || || || || Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| || |||||||| ||| | || |||| | | || || | ||||| || Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106351 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||||||||||| ||| | ||| | || || Sbjct 106350 ATCCAAAAGGAATCTACTTTACATTTGGTTTT 106319 >seq254 Length=76587 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| | || || ||||| ||||| | || || || || Sbjct 43141 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCTTC 43082 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | || | || || || || ||||| || ||||| || || || Sbjct 43081 CGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGATCA 43022 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| ||||||||||||||| | || |||| | | || || | ||||| || Sbjct 43021 ACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTACAA 42962 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||||||||||| ||| | || | ||||| Sbjct 42961 CATCCAAAAGGAATCTACTTTACACTTGGTCTT 42929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308289851520