Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq253 132 5e-26
seq254 109 6e-19
>seq253
Length=293773
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||| |||||| | || ||||| || |
Sbjct 106302 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106243
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | || |||||||||| || ||||| || ||||| || |||||
Sbjct 106242 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATTCCACCTGACCAA 106183
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||| || |||||||| ||| | || |||| | | || || | ||||| ||
Sbjct 106182 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106123
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
||||||||||||| || | || |||||||| | | | ||||| |||
Sbjct 106122 ATCCAAAAGGAATCTACATTGCACTTAGTCTTGAGATTAAGAGGTGGTCAA 106072
Score = 129 bits (142), Expect = 7e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461
|| |||||||||||| || || || | ||||| ||||||||||| | || ||||| ||
Sbjct 106762 TACAATGCAAATCTTCGTTAAAACTTTAACCGGTAAGACTATTACCTTAGAAGTTGAATC 106703
Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521
||| | ||||| || | || |||||||||| || ||||| || || || || ||
Sbjct 106702 TTCTGACACCATTGATAACGTCAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGA 106643
Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
|| || ||| |||| || |||||||| ||| | || |||| | | || || | |||||
Sbjct 106642 TCAACAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTA 106583
Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617
|| ||||||||||||| ||| | ||| | || ||
Sbjct 106582 CAACATCCAAAAGGAATCTACTTTACATTTGGTTTT 106547
Score = 122 bits (134), Expect = 1e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||| |||||| | || ||||| || |
Sbjct 106530 ATGCAAATCTTCGTTAAGACCTTAACTGGTAAGACCATTACTTTAGAAGTTGAATCTTCT 106471
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | || |||||||||| || ||||| || || || || || ||
Sbjct 106470 GACACTATTGATAACGTTAAATCTAAAATTCAAGATAAGGAAGGTATCCCACCTGATCAA 106411
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||| || |||||||| ||| | || |||| | | || || | ||||| ||
Sbjct 106410 CAACGTTTAATCTTCGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 106351
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617
||||||||||||| ||| | ||| | || ||
Sbjct 106350 ATCCAAAAGGAATCTACTTTACATTTGGTTTT 106319
>seq254
Length=76587
Score = 109 bits (120), Expect = 6e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || |||||||| | || || ||||| ||||| | || || || ||
Sbjct 43141 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTCGAATCTTC 43082
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | || | || || || || ||||| || ||||| || || ||
Sbjct 43081 CGACACCATTGACAATGTCAAATCCAAGATCCAAGATAAGGAAGGTATTCCACCTGATCA 43022
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| | |||| ||||||||||||||| | || |||| | | || || | ||||| ||
Sbjct 43021 ACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTACAA 42962
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617
||||||||||||| ||| | || | |||||
Sbjct 42961 CATCCAAAAGGAATCTACTTTACACTTGGTCTT 42929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570308289851520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |