Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq254 120 7e-22 seq253 120 7e-22 >seq254 Length=76587 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | ||| || || ||||||||||| || || | | || || || Sbjct 42925 TCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 42984 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| || || ||||| | | |||||| ||||| |||| |||||||| Sbjct 42985 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 43044 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| ||| || || || |||||||| || ||| || || | || || Sbjct 43045 ATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAAT 43104 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| || || | |||||||| Sbjct 43105 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 >seq253 Length=293773 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | || || || ||||||||||| || || | | || || || Sbjct 106087 TCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 106146 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || |||||||| | |||||||||||||| |||| |||||||| Sbjct 106147 ATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTT 106206 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| ||||| || || |||||||| |||||| || | ||| || Sbjct 106207 ATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 106266 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 106267 GGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | ||| || || ||||||||||| || || | | || || || Sbjct 106543 TCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 106602 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || |||||||| | |||||||| ||||| || | |||||||| Sbjct 106603 ATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTT 106662 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| ||||| || ||||||||||| |||||| || | || || Sbjct 106663 ATCTTGAATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAAT 106722 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||||| || || | ||| || || || | |||||| ||| Sbjct 106723 AGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCATTGTAT 106763 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | ||| || || ||||||||||| || || | | || || || Sbjct 106315 TCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 106374 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || |||||||| | |||||||| ||||| || | |||||||| Sbjct 106375 ATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTT 106434 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| ||||| || || |||||||| |||||| || | ||| || Sbjct 106435 ATCTTGAATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 106494 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 106495 GGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147603916040