Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq254 161 2e-34
seq253 145 2e-29
seq79 98.7 2e-15
>seq254
Length=76587
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| | ||| | ||| | ||| ||||| ||||||| ||||| || | |||||||| ||
Sbjct 42925 TCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 42984
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| ||||| ||||| ||||| | || |||||| || || ||||||||||||||
Sbjct 42985 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 43044
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||| || ||| || |||||||| || | ||| || ||||| || ||
Sbjct 43045 ATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAAT 43104
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | ||| | |||||||||
Sbjct 43105 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143
>seq253
Length=293773
Score = 145 bits (160), Expect = 2e-29
Identities = 164/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| | || ||||| ||||||| ||||| || | |||||||| ||
Sbjct 106087 TCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 106146
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| || || ||||||||||| | ||||||||||| || ||||||||||||||
Sbjct 106147 ATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTT 106206
Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676
||||| || ||| | || | | | || || ||||| || | ||| || ||||| || |
Sbjct 106207 ATCTTGAAT-TTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAA 106265
Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| ||||| || || || || || | ||| | ||||||
Sbjct 106266 TGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||| ||||| ||||||| ||||| || | |||||||| |||||||||| || || ||
Sbjct 106561 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACC 106620
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
||||||||| | |||||||| || || || ||||||||||| ||||| || || ||
Sbjct 106621 AGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTT 106680
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| || |||||||| || | ||| || ||||| || || ||||| || || |||||
Sbjct 106681 GACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGT 106740
Query 225696 TTTTATGAACACTTGCATTTTAT 225718
||| | ||| | ||||||| |||
Sbjct 106741 TTTAACGAAGATTTGCATTGTAT 106763
Score = 131 bits (144), Expect = 4e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||| ||||| ||||||| ||||| || | |||||||| |||||||||| || || ||
Sbjct 106333 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACC 106392
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
||||||||| | |||||||| || || || ||||||||||| ||||| || ||| | ||
Sbjct 106393 AGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAAT-TTTAGATT 106451
Query 225636 CACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694
| | | || || ||||| || | ||| || ||||| || || ||||| || || || |
Sbjct 106452 TAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGG 106511
Query 225695 TTTTTATGAACACTTGCAT 225713
| || | ||| | ||||||
Sbjct 106512 TCTTAACGAAGATTTGCAT 106530
>seq79
Length=192299
Score = 98.7 bits (108), Expect = 2e-15
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||| ||||| || ||||| || || || ||||||||||| ||||||||
Sbjct 127331 GAAAATTTGACCATCGGTAATGGAAATAACGTTAGTTGGAATATAAGCAGAGACATCACC 127272
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578
|||| ||||| | || ||||| || |||| || |||||||| |||
Sbjct 127271 ACCTTGGGTTTCAATGACTGGTAAAGCAGTTAAGGAACCACCACCTAAA 127223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192526677325424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |