Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq254 161 2e-34 seq253 145 2e-29 seq79 98.7 2e-15 >seq254 Length=76587 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | ||| ||||| ||||||| ||||| || | |||||||| || Sbjct 42925 TCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 42984 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||| ||||| | || |||||| || || |||||||||||||| Sbjct 42985 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 43044 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || ||| || |||||||| || | ||| || ||||| || || Sbjct 43045 ATCTTGGATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAAT 43104 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | ||| | ||||||||| Sbjct 43105 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 >seq253 Length=293773 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | || ||||| ||||||| ||||| || | |||||||| || Sbjct 106087 TCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 106146 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || ||||||||||| | ||||||||||| || |||||||||||||| Sbjct 106147 ATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTT 106206 Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| || ||| | || | | | || || ||||| || | ||| || ||||| || | Sbjct 106207 ATCTTGAAT-TTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAA 106265 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || || || || | ||| | |||||| Sbjct 106266 TGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| ||||||| ||||| || | |||||||| |||||||||| || || || Sbjct 106561 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACC 106620 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | |||||||| || || || ||||||||||| ||||| || || || Sbjct 106621 AGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGATTT 106680 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || |||||||| || | ||| || ||||| || || ||||| || || ||||| Sbjct 106681 GACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGT 106740 Query 225696 TTTTATGAACACTTGCATTTTAT 225718 ||| | ||| | ||||||| ||| Sbjct 106741 TTTAACGAAGATTTGCATTGTAT 106763 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| ||||||| ||||| || | |||||||| |||||||||| || || || Sbjct 106333 AGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACC 106392 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | |||||||| || || || ||||||||||| ||||| || ||| | || Sbjct 106393 AGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAAT-TTTAGATT 106451 Query 225636 CACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | | | || || ||||| || | ||| || ||||| || || ||||| || || || | Sbjct 106452 TAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGG 106511 Query 225695 TTTTTATGAACACTTGCAT 225713 | || | ||| | |||||| Sbjct 106512 TCTTAACGAAGATTTGCAT 106530 >seq79 Length=192299 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 127331 GAAAATTTGACCATCGGTAATGGAAATAACGTTAGTTGGAATATAAGCAGAGACATCACC 127272 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 |||| ||||| | || ||||| || |||| || |||||||| ||| Sbjct 127271 ACCTTGGGTTTCAATGACTGGTAAAGCAGTTAAGGAACCACCACCTAAA 127223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526677325424