Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq253 132 1e-25 seq254 111 4e-19 >seq253 Length=293773 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| || |||||||||||||| || | ||||||||| |||||||||| Sbjct 106555 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTG 106614 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || |||||||| | | || || || | | ||| |||||||| ||||||||||| Sbjct 106615 TTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTT 106674 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | |||| ||| || ||||| | |||||||| || || || Sbjct 106675 AGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCGGT 106734 Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTA 152108 | ||| || ||||||| |||||| || Sbjct 106735 TAAAGTTTTAACGAAGATTTGCATTGTA 106762 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| || |||||||||||||| || | ||||||||| |||||||||| Sbjct 106327 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTG 106386 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || |||||||| | | || || || | | ||| |||||||| ||||||||||| Sbjct 106387 TTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTT 106446 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | |||| ||| || ||||| | |||||| || || || || Sbjct 106447 AGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGT 106506 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||| ||||| Sbjct 106507 TAAGGTCTTAACGAAGATTTGCAT 106530 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || |||||||||||||| || | ||||||||| |||||||||| ||| || Sbjct 106106 GTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCA 106165 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | | || ||||| | | || |||||||| ||||||||||| ||| Sbjct 106166 GCGAAGATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGAATTTTAGATTTA 106225 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | |||| ||| || ||||| | |||||| || || || || | ||| Sbjct 106226 ACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTC 106285 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||||| ||||| Sbjct 106286 TTAACGAAGATTTGCAT 106302 >seq254 Length=76587 Score = 111 bits (122), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||| || |||||||||||||| || | ||||||||| |||||||||| Sbjct 42934 CAAG-TGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTA 42992 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | || || || || | | || |||||||| ||||| | Sbjct 42993 ATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGGA 43052 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | |||| ||| || ||||| | ||||| || || | Sbjct 43053 TCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAATGGTCTTAC 43112 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | ||||| ||||| | |||||||| Sbjct 43113 CAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816424134616