Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq253 176 9e-39 seq254 161 2e-34 >seq253 Length=293773 Score = 176 bits (194), Expect = 9e-39 Identities = 154/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| | || | ||||| |||| |||||| || || || Sbjct 106111 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCAGCGAA 106170 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| ||||||||||||||| |||||||| ||||| ||||| || || | ||| ||| | Sbjct 106171 GATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGAATTTTAGATTTAACGTT 106230 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||||||| |||| ||| ||||| | ||| || |||||||| || || |||||||| Sbjct 106231 ATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAAC 106290 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 106291 GAAGATTTGCAT 106302 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| || ||| ||||||||||||||||||| | || | ||||| ||| Sbjct 106322 ACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 106381 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || || ||||| ||||||||||| ||| || ||||| ||||| ||||| Sbjct 106382 AATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGA 106441 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || | ||| ||| |||| |||||||| |||| ||| ||||| | ||| || |||||| Sbjct 106442 ATTTTAGATTTAACGTTATCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGGTCTTA 106501 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| || ||||| Sbjct 106502 CCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| || ||| ||||||||||||||||||| | || | ||||| ||| Sbjct 106550 ACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 106609 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || || ||||| ||||||||||| ||| || ||||| ||||| ||||| Sbjct 106610 AATTGTTTACCAGCGAAGATTAAACGTTGTTGATCAGGTGGGATACCTTCCTTATCTTGA 106669 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || | ||| ||| |||| || ||||| |||| ||| ||||| | || || |||||| Sbjct 106670 ATTTTAGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTA 106729 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| |||||||| || |||||| Sbjct 106730 CCGGTTAAAGTTTTAACGAAGATTTGCATT 106759 >seq254 Length=76587 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| || ||| ||||||||||||||||||| | || | ||||| ||| Sbjct 42932 ACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 42991 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || || |||||||| || | |||||| ||| |||||||| ||||| |||||| Sbjct 42992 AATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGG 43051 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || || ||||| |||| ||||||||| | || || |||||| Sbjct 43052 ATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCTAAGGTAATGGTCTTA 43111 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || ||||| ||||| || |||||||| Sbjct 43112 CCAGTTAAGGTCTTGACGAAAATTTGCATTTT 43143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735230241584