Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq254 91.5 1e-13 seq253 91.5 1e-13 >seq254 Length=76587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168 || ||||| | ||| || |||| ||| | || ||||||||||||||||| || | Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 |||| | | || || | ||||| || |||||||| || | || ||||| | | Sbjct 42974 AAAGTT--CTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTG 43031 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | ||||||||| || ||||| || || ||| | |||||||||| ||||| Sbjct 43032 GAATACCTTCCTTATCTTGGATCTTGGATTTGACATTGT--CAATGGTGTCGGAAGATTC 43089 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 43090 GACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 43140 >seq253 Length=293773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| || |||| || | || ||||||||||||||||| Sbjct 106297 TTGCATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 106356 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | | ||| | | || || | || || || || ||||| ||||| || ||| Sbjct 106357 GTCAGATAAAGTT--CTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGA 106414 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | ||||||||| || || || | || || ||| | || ||||| | Sbjct 106415 TCAGGTGGGATACCTTCCTTATCTTGAATTTTA-GATTTAACGTTATCAATAGTGTCAGA 106473 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | ||||| ||||| || || | |||||| |||||||||||||| Sbjct 106474 AGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| | |||||| || | ||| | || ||||||||||||||||| || | Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| | | || || | || || || || ||||| ||||| || || || | | Sbjct 106136 AAAGTT--CTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTG 106193 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||||||||| || || || | || || ||| | || ||||| | ||||| Sbjct 106194 GAATACCTTCCTTATCTTGAATTTTA-GATTTAACGTTATCAATAGTGTCAGAAGATTCA 106252 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| || || | |||||| |||||||||||||| Sbjct 106253 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| || |||| || | || ||||||||||||||||| Sbjct 106525 TTGCATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 106584 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | | ||| | | || || | || || || || ||||| ||||| || ||| Sbjct 106585 GTCAGATAAAGTT--CTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGA 106642 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | ||||||||| || || || | || | ||| | |||||||| | Sbjct 106643 TCAGGTGGGATACCTTCCTTATCTTGAATTTTA-GATTTGACGTTATCAATGGTGTCAGA 106701 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | ||||| ||||| || || | || || |||||||||||||| Sbjct 106702 AGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCAT 106758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989101334632