Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017-
04-24] 296 sequences; 15,098,268 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq254 91.5 1e-13
seq253 91.5 1e-13
>seq254
Length=76587
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168
|| ||||| | ||| || |||| ||| | || ||||||||||||||||| || |
Sbjct 42914 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 42973
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
|||| | | || || | ||||| || |||||||| || | || ||||| | |
Sbjct 42974 AAAGTT--CTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTG 43031
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286
| | ||||||||| || ||||| || || ||| | |||||||||| |||||
Sbjct 43032 GAATACCTTCCTTATCTTGGATCTTGGATTTGACATTGT--CAATGGTGTCGGAAGATTC 43089
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 43090 GACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 43140
>seq253
Length=293773
Score = 91.5 bits (100), Expect = 1e-13
Identities = 165/237 (70%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| ||| || |||| || | || |||||||||||||||||
Sbjct 106297 TTGCATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 106356
Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | | ||| | | || || | || || || || ||||| ||||| || |||
Sbjct 106357 GTCAGATAAAGTT--CTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGA 106414
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280
|| | || | ||||||||| || || || | || || ||| | || ||||| |
Sbjct 106415 TCAGGTGGGATACCTTCCTTATCTTGAATTTTA-GATTTAACGTTATCAATAGTGTCAGA 106473
Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || | ||||| ||||| || || | |||||| ||||||||||||||
Sbjct 106474 AGATTCAACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106530
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| ||||| | |||||| || | ||| | || ||||||||||||||||| || |
Sbjct 106076 CCACCTCTTAATCTCAAGACTAAGTGCAATGTAGATTCCTTTTGGATGTTGTAGTCAGAT 106135
Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
| ||| | | || || | || || || || ||||| ||||| || || || | |
Sbjct 106136 AAAGTT--CTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGGTCAGGTG 106193
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287
| | ||||||||| || || || | || || ||| | || ||||| | |||||
Sbjct 106194 GAATACCTTCCTTATCTTGAATTTTA-GATTTAACGTTATCAATAGTGTCAGAAGATTCA 106252
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| ||||| || || | |||||| ||||||||||||||
Sbjct 106253 ACTTCTAAAGTAATGGTCTTACCAGTTAAGGTCTTAACGAAGATTTGCAT 106302
Score = 82.4 bits (90), Expect = 5e-11
Identities = 163/237 (69%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| ||| || |||| || | || |||||||||||||||||
Sbjct 106525 TTGCATACCACCTCTCAATCTTAAAACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 106584
Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | | ||| | | || || | || || || || ||||| ||||| || |||
Sbjct 106585 GTCAGATAAAGTT--CTACCATCTTCTAATTGTTTACCAGCGAAGATTAAACGTTGTTGA 106642
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280
|| | || | ||||||||| || || || | || | ||| | |||||||| |
Sbjct 106643 TCAGGTGGGATACCTTCCTTATCTTGAATTTTA-GATTTGACGTTATCAATGGTGTCAGA 106701
Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || | ||||| ||||| || || | || || ||||||||||||||
Sbjct 106702 AGATTCAACTTCTAAGGTAATAGTCTTACCGGTTAAAGTTTTAACGAAGATTTGCAT 106758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989101334632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |