Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq276 120 4e-22 seq217 93.3 6e-14 >seq276 Length=61907 Score = 120 bits (132), Expect = 4e-22 Identities = 205/292 (70%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 50727 TATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTA 50786 |||||||||||| ||||||||| | |||||||| || || | ||||| || || ||| Sbjct 8537 TATCAAAGATCATGTGATATGGGACTTGGCGTTCCATTTAATATCGCTTCATATGCATTA 8478 Query 50787 TTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAATTTATTCATACGTTA 50846 ||||| | |||| || || | ||||||||| | || |||||||||||||| | Sbjct 8477 TTAACCAAGATGATTGCCCATGTAGTCGATATGGATTGTGGTGAATTTATTCATACTATG 8418 Query 50847 GGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAGCAATTGACTCGAACG 50906 || ||||||||| | || | ||||| | ||||| || ||||| ||||| | || | Sbjct 8417 GGTGACGCTCATGTGTATTTAGATCATATTGATGCATTGAAGGAACAATTTTCAAGAGCT 8358 Query 50907 GTAAAGCCGGCGCCGATTTTAAT-TTTA---AAGAAAAAATCGATCGAACTAA------- 50955 ||| | || | ||||| ||| |||||| || ||| || ||| Sbjct 8357 CCAAAACAATTCCCTAAATTAATGATTAAAGAAGAAAGAAGAGATGAAATTAAATCAATT 8298 Query 50956 GA-GATTTTAAATTTGAAGATTTCG-AATTGTTGGATTACGATCCTCATCCT 51005 || |||||||| ||||||||||| | |||||||||| || || || | |||| Sbjct 8297 GATGATTTTAAGTTTGAAGATTTTGAAATTGTTGGA-TATGAACCACTTCCT 8247 Score = 100 bits (110), Expect = 4e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| |||||||| || ||||| ||||| ||||||||||||||||| || || | Sbjct 8848 AAGGTGATTTAGGTCCGGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAATATGTGG 8789 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 |||| || | |||| |||||||| |||||| | ||| | |||||| || | Sbjct 8788 ATTGTGATGCTGATTATACCGGTCAAGGATATGATCAATTACAAGATGTTATAAAGAAAT 8729 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | || || || || | ||| | | ||| | ||| | || ||||| ||| | ||| | | Sbjct 8728 TAAAGACGAATCCATATGATAGAAGAATTATCATGTCTGCTTGGAACCCACCTGATTTTG 8669 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG 50697 | ||| | | || || |||||||| || ||||||||||||| Sbjct 8668 CTAAAATGGCACTCCCACCATGTCATGTCTTTTGTCAATTTTATG 8624 >seq217 Length=263222 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 63716 TCGTTAAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTT 63775 ||||||| | | | | ||| || |||| || || |||| |||||||| ||||| ||| Sbjct 89643 TCGTTAAGGTTAGAATGAGAACTACTAAGATTCCGCAAATTGGTGATAAGTTTGCGTCTA 89702 Query 63776 TTACA-GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACC 63834 ||| | |||||| ||||| || | | |||| |||| ||||||||||| || || Sbjct 89703 G-ACATGGTCAAAAGGGTACTATCGGGGTTACTTATAGACATGAAGATATGCCGTTCACA 89761 Query 63835 AAAGACGGTATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCCCAGTCGTATGACC 63894 | | ||||| || || ||| | |||| |||||||| ||| |||| ||||||||| Sbjct 89762 GCACAAGGTATTGTTCCTGATTTGATCATTAATCCACATGCTATTCCATCTCGTATGACT 89821 Query 63895 GTT 63897 ||| Sbjct 89822 GTT 89824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667072731821760