Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 228 8e-55 >seq2 Length=2234776 Score = 228 bits (252), Expect = 8e-55 Identities = 613/931 (66%), Gaps = 45/931 (5%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| |||||| ||| | ||||||||||| |||||||| || | ||||| ||||||| Sbjct 2161569 TTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTTT 2161510 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| || ||||| ||||| | || || ||| ||| || |||| | || Sbjct 2161509 CCATGAAGTCAAATGGATTGGAAGAGTTGTAAAC--CTTCTTGTTGCCCAAAGCAAGAAG 2161452 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA-TAA 16088 |||||||||||| |||||||| | ||| |||||||| | | ||| || || |||| ||| Sbjct 2161451 TAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAA 2161392 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | || || | ||| | || || | | ||| || | || ||||| |||||| Sbjct 2161391 AGAG-ACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGA 2161333 Query 16149 TATCGGTGGCTCGTGTTTCAG-----ACGGTGTATGGTTTAGGTGTTTAAACATTAGA-- 16201 | | ||||| || | || ||| | | |||| ||| ||| Sbjct 2161332 TCT------------TTTCAACAATAACAGCGTCAGGTCT-GTTGTTCAAATGAGAGAAT 2161286 Query 16202 ------CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || ||||| ||||| ||||| ||||||| ||| | |||||| || || Sbjct 2161285 AACAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAAT 2161226 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 || | || |||||| |||| ||||| | |||||| || | |||||| || ||||| Sbjct 2161225 GTGAGACCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAG 2161166 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||||| ||||| ||||||| ||||| || | ||||| ||| | || || || | Sbjct 2161165 AAGAAAATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCG 2161106 Query 16376 TTACGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 | | |||||| ||| ||||||| || |||||||| || || || |||| Sbjct 2161105 TCATTGATCCATC---GTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCA 2161049 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 || || || || || | ||| ||||| | || | ||||| |||||||||||||| Sbjct 2161048 ATAGCATTGAATAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAG 2160989 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 ||| |||| ||||| ||||| || || || || || ||||||||||| || Sbjct 2160988 GAGTAAGTTTCAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCT 2160929 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || | | ||| ||||| | | || ||| | | || ||||| || ||||| ||| Sbjct 2160928 TCAGGAAGTTGAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCA 2160869 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTT--AATGAAATATTTTTC---GTCAGATGTAA 16667 ||||||||| || || || | ||| ||| ||| || |||| |||| | Sbjct 2160868 GATGCAGCAAAGAAAGCTAAGA--CTCTTGAAATAAAAAATCTTTCATTGTCATTCAAAC 2160811 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | | | |||||| | | ||| || || || | ||||||| ||||| ||| || Sbjct 2160810 GGTTTTCCCAATCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAG 2160751 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATC 16787 | | || || |||||||||| ||| || |||| |||| || || || | || ||| Sbjct 2160750 CTTCAGCTTTCTTATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATC 2160691 Query 16788 TATCTAAGGATTCCTTTAACACGGGTTCATC 16818 | | | ||||||||||| |||||| || Sbjct 2160690 TTTTATCGTTTTCCTTTAACAAGGGTTCGTC 2160660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414304109800