Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq4 82.4 6e-11 >seq1 Length=2480924 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| || |||||||| || ||| ||| | || Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || ||| || || |||||| | || |||||| Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| |||||||| || || ||||| ||||| |||| | | || |||||| Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || | || |||||||||| || |||| || Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873719 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| || |||||||| || ||| ||| | || Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || ||| || || |||||| | || |||||| Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| |||||||| || || ||||| ||||| |||| | | || |||||| Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || | || |||||||||| || |||| || Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873947 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| || |||||||| || ||| ||| | || Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || ||| || || |||||| | || |||||| Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| |||||||| || || ||||| ||||| |||| | | || |||||| Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||||||||| || | || |||||||||| Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACG 1874163 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || || | || || ||||| || |||||||| || ||| ||| | Sbjct 1873262 AACATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCA 1873321 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | | || ||||| || ||| || || |||||| | || |||| Sbjct 1873322 TCAGACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGAT 1873381 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| || || ||||| ||||| |||| | | || ||| Sbjct 1873382 CAGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTAC 1873441 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||||| || | || |||||||||| || |||| || Sbjct 1873442 AATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873491 >seq4 Length=1903616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | ||||| || || ||||| ||| || | || Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || ||| || |||||||| | || ||||||| Sbjct 1735424 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 1735365 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || || ||||||||| | ||| | | || ||||| Sbjct 1735364 CAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTACAAC 1735305 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||||||||| || || || |||| ||||| Sbjct 1735304 ATCCAAAAGGAATCGACCCTCCATTTGGTCTTACG 1735270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796724901210