Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 4e-20
seq4 82.4 6e-11
>seq1
Length=2480924
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | || || ||||| || |||||||| || ||| ||| | ||
Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || ||||| || ||| || || |||||| | || ||||||
Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||||| |||||||| || || ||||| ||||| |||| | | || ||||||
Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||||||||||||| || | || |||||||||| || |||| ||
Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873719
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | || || ||||| || |||||||| || ||| ||| | ||
Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || ||||| || ||| || || |||||| | || ||||||
Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||||| |||||||| || || ||||| ||||| |||| | | || ||||||
Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||||||||||||| || | || |||||||||| || |||| ||
Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873947
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | || || ||||| || |||||||| || ||| ||| | ||
Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || ||||| || ||| || || |||||| | || ||||||
Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||||| |||||||| || || ||||| ||||| |||| | | || ||||||
Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|||||||||||||| || | || ||||||||||
Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACG 1874163
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|| ||||| || || | || || ||||| || |||||||| || ||| ||| |
Sbjct 1873262 AACATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCA 1873321
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| || | | | || ||||| || ||| || || |||||| | || ||||
Sbjct 1873322 TCAGACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGAT 1873381
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| || || ||||| ||||| |||| | | || |||
Sbjct 1873382 CAGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTAC 1873441
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
||||||||||||||||| || | || |||||||||| || |||| ||
Sbjct 1873442 AATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873491
>seq4
Length=1903616
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | || || | ||||| || || ||||| ||| || | ||
Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || ||||| || ||| || |||||||| | || |||||||
Sbjct 1735424 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 1735365
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | |||||||| || || || ||||||||| | ||| | | || |||||
Sbjct 1735364 CAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTACAAC 1735305
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|| ||||||||||| || || || |||| |||||
Sbjct 1735304 ATCCAAAAGGAATCGACCCTCCATTTGGTCTTACG 1735270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410796724901210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |