Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq7 116 6e-21 >seq1 Length=2480924 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||| || || |||| ||||| || Sbjct 1873265 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873324 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| || |||||||| ||||| ||||| Sbjct 1873325 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873384 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| ||||| |||||||| || | ||||| || || || ||| Sbjct 1873385 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873444 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| |||||||| || |||||||| |||||| || |||||||||| ||| || Sbjct 1873445 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGTATGCAAATTT 1873502 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || ||||| || || |||| ||||| || Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| || |||||||| ||||| ||||| Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| ||||| |||||||| || | ||||| || || || ||| Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| |||||||| || |||||||| |||||| || |||||||||| ||| || Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGTATGCAAATTT 1873730 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || ||||| || || |||| ||||| || Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| || |||||||| ||||| ||||| Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| ||||| |||||||| || | ||||| || || || ||| Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| |||||||| || |||||||| |||||| || |||||||||| ||| || Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGTATGCAAATTT 1873958 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || ||||| || || |||| ||||| || Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| || |||||||| ||||| ||||| Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| ||||| |||||||| || | ||||| || || || ||| Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| |||||||| || |||||||| |||||| | |||||||| Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGGT 1874176 >seq7 Length=1328185 Score = 116 bits (128), Expect = 6e-21 Identities = 385/597 (64%), Gaps = 24/597 (4%) Strand=Plus/Minus Query 205383 ATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATT 205442 ||||| | ||||||||| |||| ||| | |||||||||| || | ||||| Sbjct 1158365 ATGATCTAAATATATATGGGCATCACCTAAGGTATGAATAAAATCTCCACAATCCAAATT 1158306 Query 205443 AGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACC 205502 | ||| || ||||| | || |||| |||| || | |||||||||||| || Sbjct 1158305 GCAAACATGAGCGATCATTTTTGTTAATAGTGCATAAGATGCTATATTAAATGGTACTCC 1158246 Query 205503 TAAACCCATATC--AGCTGATCTTTGATACATTTGACATGTAAGATAT---TTATTATTA 205557 |||||||||||| |||| || ||||| | | ||||| | | | |||||| || Sbjct 1158245 TAAACCCATATCGCAGCT--TCGCTGATATAATACACATGACAATTCTCCTTTATTAGTA 1158188 Query 205558 A---------------TTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 |||||| ||||| | ||| |||||| || |||| | |||| Sbjct 1158187 GGACCATTAGGGTAGCTTACATAGAATTGAGCGAAAATATGACAGGGGGGTAGAGCCATT 1158128 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 ||| | ||| | || ||||| || | || || || | ||| | ||| ||| | Sbjct 1158127 TTTGGGAAATCCTTTGGGTTCCAAGCACTGAAAATAATTCTCCTATCATAAGGATTAGTC 1158068 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722 || | |||| || | || | ||||||||||| |||| ||| || | | || Sbjct 1158067 TTAAGCTTATGAATGACATCAGCTAATTGATCAACGCCTTTGCCTGTGTAGTCGGCGTCG 1158008 Query 205723 ATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCA 205782 ||| |||||| |||||||||||||||||||||||| |||||||| || ||||| || Sbjct 1158007 CAATCCGTATATTCAGCACCAAAATGACGCCATTGAAACCCATAAACAGGCCCTAAGTCT 1157948 Query 205783 CCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcc 205842 || || | ||| || | || ||| | | | ||| | |||||| ||||| Sbjct 1157947 CCCTCACGACGATCTTTCAGCCCGATTTTATCCAGAAATTCTCTGCTTCCATTACCATCC 1157888 Query 205843 caaatatggattcctttattttttaGAATATTT-GTATTAGTTGATCCAGATATAAACCA 205901 || || | | ||||| | || ||| ||| | || || |||| || ||||| Sbjct 1157887 CATATTTTTACACCTTTCTCAGATA-AATGTTTGGCGTTGGTATCGCCAGCAATGAACCA 1157829 Query 205902 TAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 || || |||| | ||||||| || ||||| |||||| || | || ||||| Sbjct 1157828 TAGTAGTTCTAGCAAAATTCCTTTCAGAAACACCTTTTTTGTCGTCAGCAACGGAAA 1157772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455858352000