Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-27 seq4 98.7 1e-15 >seq1 Length=2480924 Score = 138 bits (152), Expect = 2e-27 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||||||||| | ||| ||||||||||| || ||||| ||| || ||||| || || || Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1874117 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| | || |||||||| ||||||||||| || | |||||||||||| || || Sbjct 1874116 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1874057 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| ||||| ||| || Sbjct 1874056 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873997 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| |||||| |||||||| || || || || | ||| |||||||| Sbjct 1873996 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 Score = 132 bits (146), Expect = 7e-26 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || | ||| ||||||||||| || ||||| ||| || ||||| || || || Sbjct 1873719 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1873661 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| | || |||||||| ||||||||||| || | |||||||||||| || || Sbjct 1873660 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873601 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| ||||| ||| || Sbjct 1873600 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873541 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| |||||| |||||||| || || || || | ||| |||||||| Sbjct 1873540 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 132 bits (146), Expect = 7e-26 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || | ||| ||||||||||| || ||||| ||| || ||||| || || || Sbjct 1873947 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1873889 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| | || |||||||| ||||||||||| || | |||||||||||| || || Sbjct 1873888 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873829 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| ||||| ||| || Sbjct 1873828 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873769 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| |||||| |||||||| || || || || | ||| |||||||| Sbjct 1873768 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 129 bits (142), Expect = 9e-25 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || | ||| ||||||||||| || ||||| ||| || ||||| || || || Sbjct 1873491 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1873433 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| | || |||||||| ||||||||||| || | |||||||||||| || || Sbjct 1873432 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873373 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| ||||| ||| || Sbjct 1873372 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873313 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||||| |||||| |||||||| || || || |||| || || ||||| || Sbjct 1873312 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTT 1873262 Score = 89.7 bits (98), Expect = 8e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||| | |||||| || ||| || || || || || || | |||||| | || Sbjct 1632708 AAGACCAAATGGAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTTCTTCCGTC 1632766 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||||||| || |||||||| ||||| | || ||||| || ||||||||||| || || Sbjct 1632767 TTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTC 1632826 Query 146185 TTG 146187 ||| Sbjct 1632827 TTG 1632829 >seq4 Length=1903616 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| |||||||| | || ||||| || || || || || ||| Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || || || || |||||||| ||||| | ||| ||||| |||||| Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 1735378 ATTCCTTCTTTGTCTTG 1735394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526260588800