Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 2e-27
seq4 98.7 1e-15
>seq1
Length=2480924
Score = 138 bits (152), Expect = 2e-27
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||||||||| | ||| ||||||||||| || ||||| ||| || ||||| || || ||
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1874117
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||| | || |||||||| ||||||||||| || | |||||||||||| || ||
Sbjct 1874116 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1874057
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
||| ||||| || ||||| ||| ||||| ||| ||
Sbjct 1874056 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873997
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| |||||| |||||||| || || || || | ||| ||||||||
Sbjct 1873996 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
Score = 132 bits (146), Expect = 7e-26
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| || | ||| ||||||||||| || ||||| ||| || ||||| || || ||
Sbjct 1873719 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1873661
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||| | || |||||||| ||||||||||| || | |||||||||||| || ||
Sbjct 1873660 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873601
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
||| ||||| || ||||| ||| ||||| ||| ||
Sbjct 1873600 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873541
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| |||||| |||||||| || || || || | ||| ||||||||
Sbjct 1873540 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 132 bits (146), Expect = 7e-26
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| || | ||| ||||||||||| || ||||| ||| || ||||| || || ||
Sbjct 1873947 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1873889
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||| | || |||||||| ||||||||||| || | |||||||||||| || ||
Sbjct 1873888 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873829
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
||| ||||| || ||||| ||| ||||| ||| ||
Sbjct 1873828 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873769
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| |||||| |||||||| || || || || | ||| ||||||||
Sbjct 1873768 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 129 bits (142), Expect = 9e-25
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| || | ||| ||||||||||| || ||||| ||| || ||||| || || ||
Sbjct 1873491 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCGA 1873433
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||| | || |||||||| ||||||||||| || | |||||||||||| || ||
Sbjct 1873432 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873373
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
||| ||||| || ||||| ||| ||||| ||| ||
Sbjct 1873372 AATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873313
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280
||||| |||||| |||||||| || || || |||| || || ||||| ||
Sbjct 1873312 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTT 1873262
Score = 89.7 bits (98), Expect = 8e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124
|| |||||||| | |||||| || ||| || || || || || || | |||||| | ||
Sbjct 1632708 AAGACCAAATGGAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTTCTTCCGTC 1632766
Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184
|||||||| || |||||||| ||||| | || ||||| || ||||||||||| || ||
Sbjct 1632767 TTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTC 1632826
Query 146185 TTG 146187
|||
Sbjct 1632827 TTG 1632829
>seq4
Length=1903616
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | || | ||| |||||||| | || ||||| || || || || || |||
Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| || || || || |||||||| ||||| | ||| ||||| ||||||
Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377
Query 146171 ATTCCTTCTTTATCTTG 146187
||||||||||| |||||
Sbjct 1735378 ATTCCTTCTTTGTCTTG 1735394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743526260588800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |