Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 295 6e-75 >seq2 Length=2234776 Score = 295 bits (326), Expect = 6e-75 Identities = 588/860 (68%), Gaps = 21/860 (2%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| ||| |||||||||||| |||||||| ||||| || | || || |||||| Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAAC 16060 ||||| || ||||| ||||| ||| | | ||| || | | ||||| | | Sbjct 2161510 TCCATGAAGTCAAATGGATTG---GAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGA 2161454 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | ||||||||| || |||||||| | |||||| ||| | | |||||||| |||| | Sbjct 2161453 AGTAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAAT 2161394 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || ||||| | || || || || | ||||| || | || |||||| | || Sbjct 2161393 AAAGAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATG 2161334 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATACA 16236 || | || | ||| || | || ||| | | || || || | | || Sbjct 2161333 ATCT---TTTCAACAATAAC-AGCGTCAGGTCTGTTGTTCAAATGAGAGAATAACAAGCA 2161278 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||| ||| ||| || ||||| || || | || || ||||| || ||||| ||||| Sbjct 2161277 AGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACC 2161218 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||||| |||| || || | ||| || |||| ||||| || || || ||||| || Sbjct 2161217 AGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAAT 2161158 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC-GTTCTAtttttactttcta 16415 ||||||||| || ||||| ||||| |||| ||||| || | || | | || | Sbjct 2161157 ACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTCATT-GA 2161099 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 ||||| | |||||| | || |||||||| | || ||||| || || ||||| | Sbjct 2161098 TCCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGA 2161039 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 ||||||||| | ||| || | || ||||||||||| || ||||| || ||| Sbjct 2161038 ATAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGTAAGTTT 2160979 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || || || || ||||| || || |||||||| ||||| | ||||| | | || Sbjct 2160978 CAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTT 2160919 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 | ||||||| | || ||||| |||| ||||| ||||| || ||||| || |||| Sbjct 2160918 GAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAA 2160859 Query 16656 AAAACGC-AAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAA-GTTTTAACCAG 16711 | || || ||| | | | ||||||| | |||| || || | ||| | ||| ||| Sbjct 2160858 AGAAAGCTAAGACTCT-TGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTTCCCAA 2160800 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 ||| || ||| ||| ||| || | ||||||| ||||||| || ||||| |||| || Sbjct 2160799 TCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTC 2160740 Query 16772 TTATACATTTTCCATATGTC 16791 |||||||||| ||| || || Sbjct 2160739 TTATACATTTGCCAGATTTC 2160720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511913279000