Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 282 4e-71 >seq2 Length=2234776 Score = 282 bits (312), Expect = 4e-71 Identities = 598/887 (67%), Gaps = 13/887 (1%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 |||||||| ||| |||||| ||||| ||||| ||||||||||| ||| || |||||| Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 ||||| || ||||||||||| | || | | || || | || | | | ||| Sbjct 2161510 TCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGAAGT 2161451 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 |||||||| |||| || |||| ||| ||| |||| | | || |||||||||| || Sbjct 2161450 AATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAAA 2161391 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 ||||| | || ||| || | | ||||| || ||||| || | || || Sbjct 2161390 GAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGATC 2161331 Query 14153 ATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212 | || ||| || ||| | || | ||| || | || || ||||| Sbjct 2161330 TTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAAATGAGAGAATAACAAGCAAGCAAAG 2161271 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 ||| ||| | || |||||||| | || | |||||| || ||||| | || ||||| Sbjct 2161270 TCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACCAGGCATT 2161211 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 || |||| || || | ||| || || | ||| || || || || ||||| || || ||| Sbjct 2161210 AAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAATACCTTCA 2161151 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392 || |||||||| || | ||||| ||| |||||| |||||| | || |||||| | Sbjct 2161150 ACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTCATTGATCCATCGT 2161091 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 ||||||||||| |||| ||| || | || ||||||||||||| ||||||| Sbjct 2161090 AAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAATAAATAA 2161031 Query 14453 TC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510 || |||| || || |||| || || |||||||| |||||| || ||||||||| Sbjct 2161030 TCTGCTTCCTTTGTGTCCTTG--ATATAAGTATCAATCAGTAAGGAGTAAGTTTCAGAGT 2160973 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570 | ||||||||||| || || |||||||| || || | ||||| | ||| || | Sbjct 2160972 GGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTGAACTT 2160913 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 | | | || |||| | |||||||||||||| ||||||||| || ||||| || | Sbjct 2160912 CAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAAAG 2160853 Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGA---GTTTTTTCCAATCGG 14684 | || | || |||||| || || ||||||| | | | |||| |||||| Sbjct 2160852 CTAAGACTCTTGAAATAAAAAAT--CT-TTCATTGTCATTCAAACGGTTTTCCCAATCAT 2160796 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 | |||||| | || | || || | ||||| || ||| ||||||| |||| Sbjct 2160795 GAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTTAT 2160736 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 ||||| ||| ||||| | |||| || || |||| ||||||||| Sbjct 2160735 ACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTT 2160689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345509560200