Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 123 5e-23 seq2 123 5e-23 seq5 93.3 8e-14 >seq7 Length=1328185 Score = 123 bits (136), Expect = 5e-23 Identities = 379/578 (66%), Gaps = 36/578 (6%) Strand=Plus/Plus Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCC---AAATGAGGTTCTCTCTT 35209 |||||||| |||||||| || |||| | || | ||| | | |||| ||| ||| Sbjct 1157700 GATAGAACAGGAACAGGCACATTATCGTTATTCGCACCTCCGCAGTTGAGATTCAGCCTT 1157759 Query 35210 CGAGACGAC-ACTATTCCAGTTCTCACTACCAAGAAAAT-TTTCTGGAGAGGAGTTGTGG 35267 || | ||| ||| |||| | || || || || || | |||||| | |||| || || Sbjct 1157760 AGAAATGACGACT-TTCCGTTGCTGACGACAAAAAAGGTGTTTCTGAA-AGGAATTTTGC 1157817 Query 35268 AAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGA 35327 |||||| |||||||| ||| |||| |||||||| | || | |||| Sbjct 1157818 TAGAACTACTATGGTTCATTGCTGGCGATACCAACGCCAAACATTTATCTGAGAAAGGTG 1157877 Query 35328 TACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATA 35387 || | || ||| | | |||||| | |||||| |||| | | ||| | | ||| Sbjct 1157878 TAAAAATATGGGATGGTAATGGAAGCAGAGAATTTCTGGATAAAATCGGGCTGAAAGATC 1157937 Query 35388 GAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAAT 35447 | |||||||| || || || || || || || ||||||||||||||||||||||||| Sbjct 1157938 GTCGTGAGGGAGACTTAGGGCCTGTTTATGGGTTTCAATGGCGTCATTTTGGTGCTGAAT 1157997 Query 35448 AT---GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATAT-A 35503 || ||| || |||| || || || || || |||||||||| || || | | Sbjct 1157998 ATACGGAT---TGCGACGCCGACTACACAGGCAAAGGCGTTGATCAATTAGCTGATGTCA 1158054 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 | | | | | ||| ||||| ||||||| || || ||| | | || ||||| || Sbjct 1158055 TTCATAAGCTTAAGA-CTAATCCTTATGATAGGAGAATTATTTTCAGTGCTTGGAACCCA 1158113 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATG----- 35618 | |||| | | |||||||| || || || || || |||||||| |||| Sbjct 1158114 AAGGATTTCCCAAAAATGGCTCTACCCCCCTGTCATATTTTCGCTCAATTCTATGTAAGC 1158173 Query 35619 --------TGG-----CTAAT---GGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGA 35662 ||| ||||| ||||||||||| || || |||||||||||| | Sbjct 1158174 TACCCTAATGGTCCTACTAATAAAGGAGAATTGTCATGTGTATTATATCAGCGAAGCTGC 1158233 Query 35663 GATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATA 35700 ||| | || || || || || || ||||| ||||| || Sbjct 1158234 GATATGGGTTTAGGAGTACCATTTAATATAGCATCTTA 1158271 >seq2 Length=2234776 Score = 123 bits (136), Expect = 5e-23 Identities = 557/861 (65%), Gaps = 35/861 (4%) Strand=Plus/Plus Query 101514 TCTGGGAAATGTACAAAAAAGAGGTTGCCTGTTTTTGGACATTGGAAGAGATTGATTTCG 101573 ||||| ||||||| || |||| | || | || ||||| ||||||||||| || | Sbjct 2160724 TCTGGCAAATGTATAAGAAAGCTGAAGCTTCCTTCTGGACTGCAGAAGAGATTGACTTAG 2160783 Query 101574 AAAGGGATCCTAAAGATTGGGAGAAAC---TCACTCAAGATGAGAAGGATTTCATTCTCC 101630 || |||| | | |||||||| || | | | | | |||| | ||| ||| || Sbjct 2160784 GAAAGGATGTTCATGATTGGGAAAACCGTTTGAATGACAATGAAAGATTTTTTATT-TCA 2160842 Query 101631 AGATTCTG-GCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCT--TACAACAC 101687 ||| ||| || |||||||| | ||||| || ||||| | ||||||| | || || || Sbjct 2160843 AGAGTCTTAGCTTTCTTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAGTAGAAAAC 2160902 Query 101688 GTCTTCG-TCAAGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGA 101746 ||| | | |||| || |||| ||||| | | | |||| || |||||| | Sbjct 2160903 TTCTCAGCTGAAGTT---CAACTTCCTGAAGCCAAGTGCTTCTATGGTTTCCAAATCATG 2160959 Query 101747 ATGGAGAGTATTCA-TGGCAACGTCTACGGAGAACTGATTGATAGACTGGTGCCC--GAC 101803 ||||| | || || | || | ||| ||||||||||| || | | ||| Sbjct 2160960 ATGGAAAACATCCACTCTGAAACT-TACTCCTTACTGATTGATA--CTTATATCAAGGAC 2161016 Query 101804 GAAAAAGACA-AGGCTATCTTGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAGAA 101862 ||| || || ||| || || || ||| || || | || |||||| | || Sbjct 2161017 ACAAAGGAAGCAGATTAT-TTATTCAATGCTATTGAAAACATTCCATGCATCAAACAAAA 2161075 Query 101863 GGAGCAGTGGGCTATTAATTGGATGCAAAG-CAATAACGATTTG---GCGGAACTAATTG 101918 || | |||||| | ||||| ||| | | || | | ||| | ||| | | | Sbjct 2161076 GGCTGAATGGGCTTTACGATGGAT-CAATGACGATGAAGCATTGTTTGGTGAAAGATTAG 2161134 Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 ||||||||||||| |||||||| || ||||| || | || || || || |||||| Sbjct 2161135 TTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCGGGCTCGTTTGCTTCTATCTTCTGGC 2161194 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 ||||||| || ||| | ||||||||||||| | ||| || || || || | || || | Sbjct 2161195 TCAAGAAGAGAGGTTTAATGCCTGGTCTCACATTCTCTAACGAATTGATCTGCAGAGATG 2161254 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 ||||| | ||| |||||||| ||| || | || | |||| | | | | Sbjct 2161255 AAGGTTTACATACTGACTTTGCTTGCTTGTTATTCTCTCA----TTTG--AACAACAGAC 2161308 Query 102099 CAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 | | ||| ||||| || | |||||||| ||| ||| ||| | | | Sbjct 2161309 CTGACGCTGTTATTGTTGAAAAGATCATTACTGAAGCTGTCGAAATCGAAAAGGGCTACT 2161368 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 |||| | | | ||||||| ||| | || |||||||||||| | ||| | ||||| Sbjct 2161369 TCACCGATGCTTTGCCTGTCTCTTTATTAGGTATGAACTGCAAGCTCATGTGTCAGTATG 2161428 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAATGTT 102274 |||||||||| ||||||| | || | ||| |||| | | || ||| || || | Sbjct 2161429 TTGAATTTGTTGCAGATAGATTACTTCTTGCTTTGGG-CAACAAGAAGGTTTACAACTCT 2161487 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||| || || |||||||| ||||| || | | ||| || || || || ||| Sbjct 2161488 TCCAATCCATTTGACTTCATGGAAAATATCTCTTTGGCTGGTAAAACTAATTTCTTCGAA 2161547 Query 102335 AAGAGAGTCGCCGAGTATCAA 102355 |||||||| | || |||||| Sbjct 2161548 AAGAGAGTTTCTGATTATCAA 2161568 >seq5 Length=1485630 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || |||||||||||||| || | ||| ||||||||||| ||||| || ||||| Sbjct 766109 CCACCAGCAGTCTTGGAAATCAATGCACATGTTTTAAGAGTATCGTAAATGCCTTCAATT 766050 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGAC-TGTTCCACA 94910 ||| || | | | | | | ||| || || || | ||| ||| ||| ||| ||| Sbjct 766049 GAATCTTCCTTCATGGCAACCAAGAAACAAGAAGACATTTGAGGT-TGAGGTGTACCAGC 765991 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 |||||||| || || || ||||| || ||||| | | ||||| | || ||| |||| Sbjct 765990 ATTAAACAAAGTAGGTGATGCATGAGTGAAATACTTCAAAGACATCAAATTATAAGTTTT 765931 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 || ||| | ||||| || ||||| || ||||| || | ||||||||||| ||| Sbjct 765930 GATAACATTATCAATGTCATCGCCATGAATACCAACAGCAACTCTCATAATCATGTGCTG 765871 Query 95031 AGG 95033 || Sbjct 765870 GGG 765868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583809814325