Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1 86.0 6e-12
seq4 84.2 2e-11
>seq1
Length=2480924
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || || || | |||||||| ||||||||||| || || |
Sbjct 1632693 CCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1632752
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || |||||| | || ||||||||| |||||| ||| || ||||| || ||
Sbjct 1632753 AAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 1632812
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || |||| | | || | ||||||| | || ||
Sbjct 1632813 ATTCCTTCCTTGTC-TTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAAC 1632871
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755
|| | ||| | ||||| || || || || || || ||
Sbjct 1632872 TTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910
>seq4
Length=1903616
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| || || || || | || || || ||||| ||||| || ||
Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||| | ||| ||||||||| |||||| |||||| ||||| |||||
Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| | || | || | | || | ||||| | | ||| ||
Sbjct 1735378 ATTCCTTCTTTGTC-TTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAAC 1735436
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | ||||| || || | || || ||||| ||||||||
Sbjct 1735437 CTCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063906988000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |