Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 307 1e-78 >seq2 Length=2234776 Score = 307 bits (340), Expect = 1e-78 Identities = 603/886 (68%), Gaps = 13/886 (1%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| ||| |||||| ||||| ||||| ||||||||||| ||| || |||||| Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 ||||| || ||||||||||| || | | || || | || | | | ||| Sbjct 2161510 TCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGAAGT 2161451 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 |||||||| |||| ||| |||| ||| ||| |||| | | || |||||||||| || Sbjct 2161450 AATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAAA 2161391 Query 13761 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA 13820 ||||| | || ||| || | | ||||| || ||||| || | || || Sbjct 2161390 GAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGATC 2161331 Query 13821 ATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13880 || || ||| || ||| | || | ||| || | || || ||||| Sbjct 2161330 TTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAAATGAGAGAATAACAAGCAAGCAAAG 2161271 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 ||| ||| | || |||||||| | || | |||||| || ||||| | || ||||| Sbjct 2161270 TCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACCAGGCATT 2161211 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 || |||| || || | ||| || || | |||||| || || || ||||| || || ||| Sbjct 2161210 AAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAATACCTTCA 2161151 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || |||||||| || | ||||| ||| |||||| |||||| | || |||||| | Sbjct 2161150 ACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTCATTGATCCATCGT 2161091 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 ||||||||||| |||| ||| || | || ||||||||||||| |||||||| Sbjct 2161090 AAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAATAAATAA 2161031 Query 14121 TC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 || |||| || || |||| || || |||||||| |||||| || ||||||||| Sbjct 2161030 TCTGCTTCCTTTGTGTCCTTG--ATATAAGTATCAATCAGTAAGGAGTAAGTTTCAGAGT 2160973 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238 | ||||||||||| || || |||||||| ||||| | ||||| | ||| |||| Sbjct 2160972 GGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTGAACTT 2160913 Query 14239 CCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298 | | | || |||| | |||||||||||||| ||||||||| || ||||| || | Sbjct 2160912 CAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAAAG 2160853 Query 14299 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGA---GTTTTTTCCAATCGG 14352 | || | || |||||| || || ||||||| || | | |||| |||||| Sbjct 2160852 CTAAGACTCTTGAAATAAAAAAT--CT-TTCATTGTCATTCAAACGGTTTTCCCAATCAT 2160796 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412 | |||||| | || | || || | ||||| || ||| ||||||| |||| Sbjct 2160795 GAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTTAT 2160736 Query 14413 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 ||||| ||| ||||| | |||| || || |||| |||||||| Sbjct 2160735 ACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCT 2160690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727910051000