Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2 307 1e-78
>seq2
Length=2234776
Score = 307 bits (340), Expect = 1e-78
Identities = 603/886 (68%), Gaps = 13/886 (1%)
Strand=Plus/Minus
Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640
|||||||| ||| |||||| ||||| ||||| ||||||||||| ||| || ||||||
Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511
Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700
||||| || ||||||||||| || | | || || | || | | | |||
Sbjct 2161510 TCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGAAGT 2161451
Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760
|||||||| |||| ||| |||| ||| ||| |||| | | || |||||||||| ||
Sbjct 2161450 AATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAAA 2161391
Query 13761 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA 13820
||||| | || ||| || | | ||||| || ||||| || | || ||
Sbjct 2161390 GAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGATC 2161331
Query 13821 ATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13880
|| || ||| || ||| | || | ||| || | || || |||||
Sbjct 2161330 TTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAAATGAGAGAATAACAAGCAAGCAAAG 2161271
Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940
||| ||| | || |||||||| | || | |||||| || ||||| | || |||||
Sbjct 2161270 TCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACCAGGCATT 2161211
Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000
|| |||| || || | ||| || || | |||||| || || || ||||| || || |||
Sbjct 2161210 AAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAATACCTTCA 2161151
Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060
|| |||||||| || | ||||| ||| |||||| |||||| | || |||||| |
Sbjct 2161150 ACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTCATTGATCCATCGT 2161091
Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120
||||||||||| |||| ||| || | || ||||||||||||| ||||||||
Sbjct 2161090 AAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAATAAATAA 2161031
Query 14121 TC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178
|| |||| || || |||| || || |||||||| |||||| || |||||||||
Sbjct 2161030 TCTGCTTCCTTTGTGTCCTTG--ATATAAGTATCAATCAGTAAGGAGTAAGTTTCAGAGT 2160973
Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238
| ||||||||||| || || |||||||| ||||| | ||||| | ||| ||||
Sbjct 2160972 GGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTGAACTT 2160913
Query 14239 CCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298
| | | || |||| | |||||||||||||| ||||||||| || ||||| || |
Sbjct 2160912 CAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAAAG 2160853
Query 14299 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGA---GTTTTTTCCAATCGG 14352
| || | || |||||| || || ||||||| || | | |||| ||||||
Sbjct 2160852 CTAAGACTCTTGAAATAAAAAAT--CT-TTCATTGTCATTCAAACGGTTTTCCCAATCAT 2160796
Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412
| |||||| | || | || || | ||||| || ||| ||||||| ||||
Sbjct 2160795 GAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTTAT 2160736
Query 14413 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458
||||| ||| ||||| | |||| || || |||| ||||||||
Sbjct 2160735 ACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCT 2160690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727910051000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |